Pseudomonas fluorescens UK4, HZ99_RS11440
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain UK4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GACGCGATCGGCCTTGAGGTTAGGCAGGCTTTGCAGCAGTAGGCTCTGCCCGACCTTGCCGGCCAGGTCGCCACGCTTGAGCACGGCGCTGATGGCGCCA CCGCTCAGTTCGTCGACTTGTCTGGCGGCCGCGCCGAGCTTGCGGCCTTCGCCAATGGCAACCACGAGGGTGGCGGTCTTCAACGTTTCGGGGCTAACGC TTTTTACAACCAATTCCATGTTCGGGTCCCTTATATAAGGTCAAGGAGCCTGGAGTCTGTACTCCGGCCTGTAGGCAGGGCTCGCCTGGGCGAGCGCGAC AAAGCCCGCAGTTTGTACCGCGCCGCCTGAGCCTGACAACCCTTGACGCCAGCTTTGTGCACCGGTGTGAGCAAGCTCCGTGACAGGCGCCGACAATCAC AGGATAATGCGCCATCTTTTTCGCCGGCCCGTGTCAACGGGGCGACTTGATATGCTTGCTTGTTTGGCCGCCTTAGCCTGACAACCCTGGAGTGTCTGGT
|
|
| DNA Sequence for Gene |
>HZ99_RS11440
TTGATTGTCTTCCGTTATCTGTCCCGCGAAGTCCTGCTGACCCTGAGTGCCGTGAGTGCGGTGTTGCTGGTCATCATCATGAGTGGTCGTTTCGTCAAAT ACCTGGCCCAGGCCGCCTCGGGGGCCCTGGATCCAAGTTCATTGTTCCTGATCATGGGCTTTCGCATGCCAGGATTCCTGCAACTGATCCTGCCCCTGGG TCTGTTTCTCGGGATCCTGCTGGCCTATGGCCGGCTCTACCTCGAAAGCGAGATGACTGTGCTGTCGGCCACCGGCATGAGCCAGCAGCGTCTTCTGGCC ATGACCATGGTTCCGGCCACCGGCGTGGCGCTGGTGGTGGCCTGGCTGAGCCTGAGCCTGGCGCCCCAGGGCCTCATGCAGTTCCAACTGGTGCTCAACA AACAGGACGCGATGACCGAATTCGACACCCTGGAGCCGGGGCGCTTTCAGGCACTCAACGACGGTACCCGCGTGACCTACACCGAGCGCATGTCCGACGA CCGTAGCAACCTCGGCGGTGTGTTCATTTCCGAGAAGCGCCTGGGCCAGGACAAGAAAGACCGTGGCATTTCCGTCTTGGTGGCCGATAGCGGGCGCCAG GAAGTACGCCCGGACGGCAGTCGCTACCTGATCCTGGAAAACGGCTATCGCTACGATGGCAGCCCCGGCCAGGCCGACTACCGCGCCATCAAGTACGACA CCTACGGCGTCATGCTGGCCCGGCCGGAAGTCAGCAATGAGGTCACCGACCGCGACGCTATCCCGACGAGCGCCCTGATCGGCAGCAAGGAGTTGCGTTC GATCGCCGAACTGCAATGGCGTATCTCCCTGCCGCTGCTGGTGTTTATCGTCACCTTGATGGCTGTGCCGCTGTCCCGGGTCAACCCGCGCCAGGGCCGC TTCCTCAAGCTGCTGCCGGCGATCCTGCTGTACATGGCGTACCTGACCATCCTGATTTCTGCCCGTGGCGCCCTGGAGAAGGGCAAAGTGTCGCCGATCG TGGGGCTGTGGTGGGTCCACGGTGTCTTCCTGATGATTGGCCTGGGCCTGCTGTATTGGGAACCGGTTCGTTTGAAAATGCAGAGCCGTCGCGGCATGAA GGAGATGGCTCGTGGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTGGATCGCTACATCGGTAGCAGTGTACTGGTCGCCATCCTGGCGGTATTGGGCATCATCCTCGGCCTGGCGTCGTTGTTTGCCTTCATTGATGAAGTG GGCAACGTCACCGAGACCTACACGGTCACCGACGTGCTGAGCTACGTGGCGCTGACCGCCCCGCGCCGGCTCTACGACATGATGCCAATGGCCGCGCTGA TCGGTTGCCTGATCGGCCTGGGCAGCCTGGCCAGCAACAGCGAACTGACTATCATGCGCGCGGCGGGGGTCTCCATTTCCCGCATCGTCTGGGCCGTGAT GAAACCCATGTTGCTCTTGATGGCTGCCAGCGTGTTGATCGGCGAGTACGTGGCGCCACCGGCAGAAACCACGGCCCAGGCCAACCGCGCGCTGGCCCAG GGCTCGGGTGACGCCCAGAGTTCCAAACGGGGCCTGTGGCACCGTCAGGGCGATGAATTCATCCACATCAACGCGGTGCAACCCGGTGGCTTGCTGGTGG
|
|
| Amino Acid Sequence |
>permease
MIVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPSSLFLIMGFRMPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLA MTMVPATGVALVVAWLSLSLAPQGLMQFQLVLNKQDAMTEFDTLEPGRFQALNDGTRVTYTERMSDDRSNLGGVFISEKRLGQDKKDRGISVLVADSGRQ EVRPDGSRYLILENGYRYDGSPGQADYRAIKYDTYGVMLARPEVSNEVTDRDAIPTSALIGSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQGR FLKLLPAILLYMAYLTILISARGALEKGKVSPIVGLWWVHGVFLMIGLGLLYWEPVRLKMQSRRGMKEMARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|