Pseudomonas fluorescens UK4, HZ99_RS05315
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain UK4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AATGCTGAAGATGGCGTCGAAGGCTTCCGGAAATTTGTTTCTTTTCTCAAACAGCGATTTCCTGACTCAAAAAGCGAGGTCAAACAGGTTTTTGTCGATG GAGATATTGTTGTTTTACACGTCAAAAATACCGGCCGTGACGAGGGCGTGACGCGGGCAATCATCGATATCTTCCGGATGGAGAATGGGAAAATTGTTGA ACATTGGGATACTATTCAAACGGTTCCTGAAAAGGCTGCTAACGCTAACGGTATGTTTCTCGGCGAGTAGAAATGAAAATACTTGCACATATTGGGCCTA AGTCGAGCGGCCAGACCAAGGCAGATTAATTAACTGGCTGCTTAGCCAGCCTTCCCTCGGACAATCCTTCCCGCTCTCACCTCATCTGCATATCCCACAA GCCTGTGGCGTTCATACCTTTAGAGGAGTTCCCTCATTGCGAGCTGGACGTCGCGCTACTAGGATTGGACTCGATATTTGGCCCAATCGGAGGAAAAATC
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| DNA Sequence for Gene |
>HZ99_RS05315
ATGGCTACATTGCAGAGTGACGACAAACGCCCAGCGCCGGATCGTGCGGAGGATAATGCCTTTTTCCCATCGCCATATTCGCTCAGCCAGTTCACTTCCC CCAAATCTGATCTCAGTGATGCTGACTATCCCAACCCTTACAAAGGCGGGCGATGGAAGATTCTGCTGATTGGCGCTGACGAGCGTTATCTGCTGACAGA CAACGGTACGATGTTCTCCACTGGCAATCATCCTGTTGAAACTTTACTGCCAATGTATCACCTAGACAAAGCGGGCTTTGCTTTCGATGTCGCGACACTG TCTGGAAACCCGGTGAAGTTTGAATTCTGGGCCATGCCCTCCGAAGACAGCGAGGTAAAGGAGTTTTACGCCAAGTACCGTGAGCAGTTCAAGAAACCTC TTAAGTTGTCCGACGTAATTGAGAAGGCGTTGGGTGATGATTCGGACTACATCGGTGTCTTTATACCTGGAGGCCACGGCGCACTGATCGGGTTACCTGA AAGTTTTGATGTGAAACACGTATTGCAATGGGCAGTAGCTAAAGACAAATTCGTGATTTCCTTGTGTCATGGCCCTGCCGCGCTGCTTGCGGCGGGTCTT GAAGAGTCAAAGACTTCCTATGTTTTCAACGGCTACAAAATTTGTGCTTTTCCCGATGCTCTGGATGCGAAGACACCTGACATCGGCTACATGCCTGGGC ATTTAACCTGGAAGTTTGGCGAGCAGTTAGAGGCGTTGGGGGTTGAGATAATCAACGAGGGTATTTCCGGTGCTACTTTCAGAGACCGCAAATTGTTAAC CGGTGATAGCCCTCTGGCGGGGAACAACTTGGGTAAATTAGCAGCGGACGCTCTCCTGAAAGAGCTTGATGTGGGGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAAGCCTGTCGAGGCAACCTTGCGCGCCGCTCTCGAGATTGAAGCGGTGCGCGATTTAGGCACAATCCAAGAGGTGGTCCTGTAGATCCTTTTCATCACG GTAAGGTCTGCGACCAAGCTTCATTCGGACGAACATGCCACCCACCAGGGGCGGCCGCCACGGCTTGATAGTTGGGCCTGTAGCCAGGGCCGACAGGATG TCTGCTTCCATAACTATCTCCCGCCGCCCACTGCTGGTCGCGCGGTCTTGATGATGAAATATCCGGACAGACGGAGCCTGCGAATCAGTTGTGGAAAGTC TTCTGTAAGTGACTTTTGGGCTGTCGATTAAAGTGCCCCTACCGATGTCTACTCGGTGTATTTCAGGCGATATTCGGTTGGCGTCAATCCTAGTTCCCGG CGAAAGGCTCGACTAAAAGCCGCATCTGAATCATAGCCCAGATCTTCCGCTATTTTTGAGACGCGTTGGTTTGACGACCTGAGACGTTTTCCTGCGAGCT
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| Amino Acid Sequence |
>chaperone protein HchA
MATLQSDDKRPAPDRAEDNAFFPSPYSLSQFTSPKSDLSDADYPNPYKGGRWKILLIGADERYLLTDNGTMFSTGNHPVETLLPMYHLDKAGFAFDVATL SGNPVKFEFWAMPSEDSEVKEFYAKYREQFKKPLKLSDVIEKALGDDSDYIGVFIPGGHGALIGLPESFDVKHVLQWAVAKDKFVISLCHGPAALLAAGL EESKTSYVFNGYKICAFPDALDAKTPDIGYMPGHLTWKFGEQLEALGVEIINEGISGATFRDRKLLTGDSPLAGNNLGKLAADALLKELDVGE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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