Pseudomonas deceptionensis DSM 26521, TR67_RS22340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 8_178921_46.2196, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGCTTGTGGCGTGATCCATATCCCTTGGCTGTCTTCGCGGCAGTCAAGGGCTGTCAGAAACTGCCCGGTGCAAGGCCCGGCAACGCATTCCCCGCTTT CGATCAGAAACAATGCAGAGTGGGTTGCGCACTGGATCAGGCTGGCGCTTGAGTCGAGAAACTGATCCGGTTGCCACTCAAGCGAAACCCCGCGATGAGG GCAGCGATTTTTGTAGACGTAGACCAAGCCTTCACGACGAACTGCGAACAGGCGCAGTTCATCGAGCTCAAAGCCACGGCTTGCACCTTCGCCCAGTGCC TCTGAGGGGCATAAAAATTTCATGACAATCCTTAATAGCAGCCAAACGGTTGTGTTGATGAGCCAGGGCCGGCGGGTTAAGAGGTTGACGTGCAAATGCA AACAATTATCAAATAGAGAGCTTGCTCTGCGATGTGCTCTTGCCACGCAGTGATACTACCTTTGTCCCGTTGAGCCCTCTTCTTCAAGGAATGCCTCTGT
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| DNA Sequence for Gene |
>TR67_RS22340
ATGCGCTTGAGTACACGCCTGATTACGCTCTGTGCTGGCCTTATGATCAGCCATGTCAGCCTGGCCGGCGAGTTGCCACAACGTTGGGTCAGTGCCGGAG GGGCTCTTTCGGAGTGGGTCAGCGAGTTGGGCGCGGAGTCTAAATTGGTTGGGGTCGATACCACCAGTCAACATCCTGAATCACTTAAGTTGCTCCCCAG CATCGGGTATCAGCGCCAGCTCTCGGCAGAAGGCATCTTGAGCCTTAAACCGGATGTTTTGATCGGCACGGACGAGATCGGCCCGCCGCCTGTTCTGGTG CAGATCCGTGGTGCCGGTGTGCCGGTCGAGATGTTTTCATCCCGGGCCGACCTCGCAAGCCTTGAAGCCACGTTGGCGCACTTGGGGCGCCTGTTGGGTG ACGAGGCGCAAGCAGCGCAACTGTTCAAGGACTATCAACAGCAACTGGAACAGCATCAGCTACAGGTCAAGGCTGCACAAGCGGATCACAAAGCGCCTGG AGTGCTGTTGCTACTGGGGCACGCAGGCGGCAAACCGCTGATTGCCGGTAAGGACACGGCAGCAGACTGGCTGCTGACCCGGGCTGGCGGCCATAACCTG GCCACCCACACGGGCTACAAGCCGTTTTCGGTGGAAGCCCTGGCCGGGTTGAATCCTGAAGTGCTGGTGTTCGCTGACCGCAGCCTCACGGGTGAGGCGG CCCGTACAGCGCTGATGAAAGAAAATCCGATACTGGCTTCGATCCGTGCCGCTAAAAACGGCCGTGTATACGAGCTGGACCCAACCCTGTTGGTGGGTGG GCTGGGGCCACGATTGCCAGCCAGCTTGAAGCAACTGACGGCTGATTTTTACCCGTCGGCTGCGGCCAACAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAACACTGGTCAAGCCGCGCTCTTTGTTCATCGGTCTGGGTGCGCTGTGCCTGTTGGCGACTTGGCTGTCGCTGGCGTTGGGGCCGGTGAGCTTGCCGTT GTTCGACACCTTGCGCGCGGCACTGCGTTTGCTCGGTATTCCTATCCAGGGGGAGGGGTTGGAGCAGGCCGAGTTGATCCTTGGGCAGATCCGTTTACCA CGAACGTTACTGGGCTTGGCAGTTGGCGGGGTGCTGGCGCTATCAGGTGTGGCCATGCAGGGGCTGTTTCGTAACCCGCTGGCCGACCCCGGGTTGGTGG GGGTGTCTAGCGGCGCGGCCCTGGGTGCGGCCATTGCGATTGTAGGCGGAGCTGCTTTTGGCGGGCTGCCGGAATTTATCGGGCCGTATCTGCTGTCGCT GTGTGCATTCCTCGGTGGGTTGGGAGTCACGGCGTTGGTGTATCGGTTGGGGCGCCGCAACGGTCAGACCAACGTCGCCGTCATGTTGCTTGCAGGGATC
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| Amino Acid Sequence |
>ABC transporter substrate-binding protein
MRLSTRLITLCAGLMISHVSLAGELPQRWVSAGGALSEWVSELGAESKLVGVDTTSQHPESLKLLPSIGYQRQLSAEGILSLKPDVLIGTDEIGPPPVLV QIRGAGVPVEMFSSRADLASLEATLAHLGRLLGDEAQAAQLFKDYQQQLEQHQLQVKAAQADHKAPGVLLLLGHAGGKPLIAGKDTAADWLLTRAGGHNL ATHTGYKPFSVEALAGLNPEVLVFADRSLTGEAARTALMKENPILASIRAAKNGRVYELDPTLLVGGLGPRLPASLKQLTADFYPSAAANK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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