Pseudomonas deceptionensis DSM 26521, TR67_RS21345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 7_249332_29.9047, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCTGCTCTCTCCTTAATACGCTGACTAGGGCCAGCGTCGAATAAAGGGAGCACGAACATGCGTCACCTCTATCGCGGTAACCATTATTTGCTGACAGTT TGTAGCTTGAGCGCCTTGATGGGTTTGTGCAGCGTCGTCCAGGCCGCTCCTAATGGCGAGATCGTGGTGACACGTACGGTTCAACCCTATGCGGTGGGCA ACCCGCCCATGCATCCCGACCCTGATCCGCGCACCGTCAATGCCAACCCTTCCGCACAAGTGATAGGTGTAACCGGTGAGCTCACTGATGGTGACTTTGC CGGTGTGAGCACCGGTGCTTCGATCAACCGCATCATCATCCCCCACGCCAATTCATTGCCCGGGCTCAACAACAGCAACGGCCTGCCAGGCATGACCAAC GGCCATGGCGGCGGCAGTGGCGGCACTATATCCAACACGATAGGCAACAGCATCGAACAGGGCATGCGCCCACTCTCAGTGTTGAGCCAGGGGAAATAAC
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| DNA Sequence for Gene |
>TR67_RS21345
ATGACTGCCCGCCGACTGCCCGTACTGATTGCCGCATTGCTTGCCAGTGTCAACGTAATGGCTGCCTCCGATAACAACGCCGAGATCAACAATTCCGGTG CTGATTTTCATGGCAACGTCACGATCAACCAGGCGGCCGGCGATCAGCAGCAGCAAGTCAACGTCCGGGCGGTTGCCCTCGGCACCTCGGCACACGCCTC AACCTCCGTCACCCAAAAAATCAATACCCCTGCCGATCCTTCGCTCAATGCCAAGGCAGCAATTCTCGGCAACTCATTCAGTAATGGCACCGGCGTGATC GGGATCAACCAGTCGGCCGGTGCCAACAACCAAATGGTCAATGCAGTGCGGATAGGCATCAGTGCCCAGCCTCAAGGCATAGACGACAGCGTCCTGTCAC AGCAGAACGTGGCGCTGATACCAGACTCGGGCACTGCACCCCCCACCAGCGGCAGCCGCCAGGTCGTGACAGGCGACCAGGCCTTCACCGGCAGCCGCGG GGTGGTGCAGTTGAACCAGAGTGCAGGGGTGGGGAACCGCATGGCTAACACCCTCAACATACGGGTTGCTGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGAGAGCAACGTAGTGCAATTAGAAAGTGCCAACACTTAACTCACTATTGAAGCACGGAGAAACATCATGAAACCGTCAAGCGCTCTGAAACCTCTGG CTTTTGCTATGGCCGCACTTCTGTCCGTAGCCGCATATGCTCACAACGATGGCCCACCACCTCCACCGTCTTACACAATGGACCCTAATGCGGGGGCTGC AGCTGTTGTGATTGACGTGCAAAACAGTCACAACAACAAAGTGACCAACAAAGCGATCAAAAACACCGCTACCGTAAAAGACTCCGTCAAAGGGGCTGAA GGTAACATGGGTGTCAACGCCGCAGCCGGCTCGGGCAACCAACAAGACAACGCCGTTGCAATCGCAACCGCTGACGAAACGTTCGTCTTTGGTACCGCCG CATCACTGACCAGCGCAACCCAGACCAACAGTCATAACAACGACCACAACTACGGCACACAAAATAACGCCAAGCTGGAAAGTTCAGGCAATGGCAGCTC
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| Amino Acid Sequence |
>autotransporter adhesin
MTARRLPVLIAALLASVNVMAASDNNAEINNSGADFHGNVTINQAAGDQQQQVNVRAVALGTSAHASTSVTQKINTPADPSLNAKAAILGNSFSNGTGVI GINQSAGANNQMVNAVRIGISAQPQGIDDSVLSQQNVALIPDSGTAPPTSGSRQVVTGDQAFTGSRGVVQLNQSAGVGNRMANTLNIRVAD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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