Pseudomonas deceptionensis DSM 26521, TR67_RS21290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 7_249332_29.9047, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCGCCTTGACCGCCTGGACTCGGCTCGTGTTGGCAGCTCGCGTGCAATCACCCAGCTGATCCTGCACCTGGTGGAAGGTACCCCGATCCGTCTGGTTG ACGGCGGCGAACAAAAACGCTGCTTCACCGACGTGGCCGACGGCATCGAAGCCCTGGCACGCATCATCGACAACAAGGGTGGCAAGTGCGACGGCCAGAT CATCAACATCGGCAACCCGGATAACGAAGCAAGCATTCGTCAACTGGGCGAAGAGTTGCTGCGTCAGTTCGAAGCTCACCCGCTGCGTGCCAACTTCCCT CCGTTTGCCGGTTTCCGCGACGTTGAAAGCCAGTCGTTCTACGGCACAGGCTATCAGGACGTCAGCCATCGCAAGCCCAGTGTAGAAAACGCCCGTCGCC TGATCGACTGGACGCCGACCACCGAGCTGAGTGAAACCATTGGCAAGACCCTGGATTTCTTCCTGCGTGAAGCCATGGTAGAAATCGCGGAAAAACGCTG
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| DNA Sequence for Gene |
>TR67_RS21290
ATGCAAGCTGGACTACGTATTGATGTCGACACGTACCGTGGAACCCGTGAGGGGGTTCCGCGGCTACTCGAACTGCTCGACGAAGCCCAGATCAAAGCCA CGTTTTTTTTCAGCGTGGGGCCGGACAACATGGGTCGCCATTTATGGCGGCTGATCAAGCCCCAGTTTTTCTGGAAGATGATGCGCTCCAAGGCGGCCAG CTTGTACGGCTGGGACATCTTGCTGGCCGGCACCGCCTGGCCGGGCAAACCGATCGGCAAGGATCTGGGGCACTTGATGCGCCAGACCCTGGCCGCCGGC CATGAAGTTGGCCTGCACGCCTGGGATCACCACGGCTGGCAGGCCAATACCGGCCGCTGGAGCGAGGCCCAACTGATAGAGCAGATCCGCCGTGGTGTCG AGACGTTGAGCGACATCACCGGGCAGGCCGTCGAGTGCTCGGCCGCCGCCGGTTGGCGGGCTGATGAACGCGTAGTCCAGGCCAAGGAAACCTTTGGCTT TCGTTACAACAGTGATTGCCGCGGGCACAGTCTGTTTCGGCCAAGGTTGGTCGACGGCAGTCTGGGCGCGCCGCAAATCCCTGTGGATTTACCCACCTTC GATGAAGTGGTCGGACCGCAGATCAGTGCCGCCGATTTCAACTCATACATTCTTGATCGCTTCAGCCCGCAAAAGCTGAATGCGTACACCATCCATGCTG AAGTAGAAGGGATTCTAATGGCGAACGACTTCCGTCAATTACTGGCTCAAGCCCGTGCCCGCGACATTCACTTTCAACCCTTGCGCGACTTGCTCCCCGT CGACCTCAACAGCCTGCCTGCCGGGCAGTTGAGCCGTGGTGTGCTTGAAGGCCGCGAAGGCTGGTTGGGAGTGCAGCAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTTCACGCTGGACAATACCGCTGCTGGTTTTAGCCTTTGTTGCGTTTTACCTGTTGCCACTGGGCACCCACGGCTTGTGGATTCCTGACGAAACGCGCTA TGCGCAAATCGGCCAGCAAATACTGGTCGACGGTAACTGGATCACCCCGCACTTCATGGATTTGCGTTACTTCGAGAAGCCGATTGCCGGCTACTGGATG ATTGCCATTGGCCAGGCCATTTTTGGTGAAAACCTGTTTGGCGTGCGCATTGCGTCCGCCATCGCCACCGGCCTGAGTGTGTTTCTGGCCTATGCCGTGG CCCGCCGGTTGTGGAATGACCCGCGCAAAAGCTTTGCCTGCGCCCTGGTGTACATGACCTTTGGCCTGATTGCAGGCCAGGCCGGGTATTCCAACCTCGA TCCGCAGTTCACCCTGTGGGTCAACCTGAGCATGGTTGCGTTGTGGTTTGCCGTTGACAGCACCCGCCCCCGCGATCGCCTGATCAGTTGGGCCGTACTG
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| Amino Acid Sequence |
>4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
MQAGLRIDVDTYRGTREGVPRLLELLDEAQIKATFFFSVGPDNMGRHLWRLIKPQFFWKMMRSKAASLYGWDILLAGTAWPGKPIGKDLGHLMRQTLAAG HEVGLHAWDHHGWQANTGRWSEAQLIEQIRRGVETLSDITGQAVECSAAAGWRADERVVQAKETFGFRYNSDCRGHSLFRPRLVDGSLGAPQIPVDLPTF DEVVGPQISAADFNSYILDRFSPQKLNAYTIHAEVEGILMANDFRQLLAQARARDIHFQPLRDLLPVDLNSLPAGQLSRGVLEGREGWLGVQQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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