Pseudomonas deceptionensis DSM 26521, TR67_RS18855
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 6_394563_31.1172, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCCCTTAAGCCTGTGAAAAGCGACCTTAGGGTCGCTTTTTTCGTTTGTGGAGTTCCATCAAGATCTCCCTCCAGCCCACGGAAAGTTGTACTGAATTC CGTCTTCTGAAATCGGCTGGCTCCCCCCCCAAAAAGACGACGTATGCAGGACGCTGGCTGATGACGCTGGCCCGGTCGACAGCTGAAAAATCACATAGGA AAAGCCCCGTAGCTGAAAAGCAACGGGGCTTTTTCGTTTCTGATTTTCGATTCAGGGCAACAGCCATGGTTTGAGTCAGCTCTGTGGCTTTGCGGGTGTC TTTGATTGTGTAGTGCATCACCCAAGGATTACCCGCAAGAACATTCTGTCCCTGCTTTCAGAACGGTCCTAAATACTTTTTAACCAAGAAAGTAAAAGAT TCCGCCCTCGCTGGACCGCAGCAACTGCGCGGTCGTGCAAAGCGCAAAAAAGGCACTGGCTTGCTCACAGCCAAGTCAATGCGGCATGGACGGAATCAGC
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| DNA Sequence for Gene |
>TR67_RS18855
ATGTTTAAATTTCTCCTTGGGAAGAGGTTGTTATCTTTGGTTTTGTTCGGTTGCCTGGCGGGACCGAGCTCTGCCGTGGCGGCCCCGCTACCGACACCGG GTGAGCAAGAGTTGATTCGTGATCGCCAAGAGCGATTGCTTGAAGAACAACGGCGCCGACTTGAAGAACTCCAGGCGTTACCGGGTAAAAAAGAGCCCCC CGCAACCCCGGTTGCCGCAACAGGCAGCCGCTGTTTTCCTGTTAAAACCATCGAAATCAAAGGCGCCGACAGCCTGTCCGCTGGTGAGCGCGAGGGTGTG CTCAAGCCTTACATCGGGCAGTGTCTTGGCGTAGCGCAACTTAACGAATTACTCAAAACCATCACTAACCTGTACATCGACAGGGGCCTGGTCACAAGTC GCGCTTATCTGCCGCAACAGGACTTGTCTAAAGGTTATCTGCAAGTGCTGGTGGTGGAAGGCAAGCTCGAAAGCTTCAAGAGCTCGGACAACAGTGGTCT GTCGAATCGCGAATTGGCCATGGTCTTTCCCGGACAGGATGGCAGTCAGCTTAATCTTCGAGAAATCGAGCAGGCGATTGATCAACTCAACCGCTTGCCT TCCAACAAGGCACAAATGGAACTGGCCCCCGGCAGTGAAGTGGGCGGCAGTACCGTGCTGGTGAAGAACGATCCGCAGCAGCTTTGGCGCGCTAGCCTGT CGCGTAACAATGACGGCCAAAAGAGTACCGGCGAGCAACAGTGGGGTACAGGTTTTGAATGGGACAGCCCGTTAGGCCTTGCGGATCAACTGGTTCTGCG CGGTGGGCATGACGCGCTCAGTGATCGCCTGAAAACCTCAAAGAACGCGATGCTTTATTACAACCTGCCATGGGGCTGGTGGAACTTCGCTTATACCTAT AGCCAGAGTGGCTACCGTTCAGTCGTACAACTTAACGGCCATGGTTTTAAACAATCCGGGGACAGTGCAAACCATCAACTGCGTGCCGAGCGGGTGGTCC ATCGCGACGCGATGAGTAAAACCTCCCTCAATACCGGTCTGGCGCATATGCGCTCCAATAACTACATCACAGATTCACGACTGCGCAACAGCAGCCACCG CCTCAGCGAATTTCAGGTTGGCATCAACCACGGCCGGCGCATCGCCAATGCCTTCGTCAACCTGGATGTCGGCATGCAAAACGGCATCGGAGCCTTTGAT GCTCAAGGTAGTCACAACCTCAAGCGGGGCATGCCAAACGCCCGATACCGCAAATACACCGCGACCATCAGCTATTTGCATCCGCTCAAGCTATGGGGCG AGTCCTTCAGTTTTACCAGCATGGCCACCGGCCAACGCAGTGAGGATGTGCTGTTCAGCCCGCAACGCATGAGTTTGGGCGGTTCAGCCTCGGTGCGTGG TTACAAGGACCAACAGCTTTCCGGCGACAGCGGCGGTTATTGGCGCAACGACCTGCGCTGGTTGCGCCCGGTAACTCTGGACTGGCTGCGCCCGGTATTT ACCGATTACGGCACCAGCCTCGGCTACGACCAGGGAGTGATACGCCACGGTCGCTACAGCCGGGAGCTAAGTGGTCGAGTCTCCAGCAATTCGCTGGAGC TGTTTGCCCGTGGCCGCAACCTCAGCGCCAGCGTGACCTTTGCCCACTCTCTGGAACGACCGGATGTGATCACCGAGCGCGAAGCACCGATCTATTTCCG TATGGATTTCTTCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCAACGCCTTGTTGCATCGAGAAACTGACATGGATGACCGTCTATTAGCCTTTTTGGCCCGCCAGCCTTCGGCGGCCATGCAACTCCGTGAGTCATTCT TGGGAATGCCAAAACGTGGACTGGCCTTTATTTTGGCCAACGCAATTTTCTGGCAGCCACTGCTGGTGCAGGCCGAAGGTATCGTCGTCAGCGGGCCAGG CACAAGCCTGGAAGCAGCGGGCAATGGCGTGCCCATCGTCAATATTGCTGCACCCAATGGCAGCGGCTTGTCGCACAACCAGTTCAGTGACTACAACGTC GGTGCCAATGGCCTGATCCTCAACAACGGTATCGACCGCACGCAATCGACCCAGTTGGGCGGAATCATCCTCGGCAACCCTAACCTGCATGGCAACGCTG CCAACATAATCCTCAACGAGGTGAACGGCGGCAGCCCCAGCCAGTTGCGCGGTTACACCGAAGTTGCGGGGCAATCGGCCAAGGTGATCGTGGCCAACCC
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| Amino Acid Sequence |
>ShlB family hemolysin secretion/activation protein
MFKFLLGKRLLSLVLFGCLAGPSSAVAAPLPTPGEQELIRDRQERLLEEQRRRLEELQALPGKKEPPATPVAATGSRCFPVKTIEIKGADSLSAGEREGV LKPYIGQCLGVAQLNELLKTITNLYIDRGLVTSRAYLPQQDLSKGYLQVLVVEGKLESFKSSDNSGLSNRELAMVFPGQDGSQLNLREIEQAIDQLNRLP SNKAQMELAPGSEVGGSTVLVKNDPQQLWRASLSRNNDGQKSTGEQQWGTGFEWDSPLGLADQLVLRGGHDALSDRLKTSKNAMLYYNLPWGWWNFAYTY SQSGYRSVVQLNGHGFKQSGDSANHQLRAERVVHRDAMSKTSLNTGLAHMRSNNYITDSRLRNSSHRLSEFQVGINHGRRIANAFVNLDVGMQNGIGAFD AQGSHNLKRGMPNARYRKYTATISYLHPLKLWGESFSFTSMATGQRSEDVLFSPQRMSLGGSASVRGYKDQQLSGDSGGYWRNDLRWLRPVTLDWLRPVF TDYGTSLGYDQGVIRHGRYSRELSGRVSSNSLELFARGRNLSASVTFAHSLERPDVITEREAPIYFRMDFFL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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