Pseudomonas deceptionensis DSM 26521, TR67_RS18550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 5_438339_49.8392, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGGGTCGAGGTTGAACTGCGTCCGTCCGGGTATCGGCAAGCCCAGGGCGATGGCGTAGCTGAAATCTTCCCCGGCAAAACCAAGACGCAGGCGCTTGG TTTCTTGACGCACGCTGGCATGTACATCGACTTCGCCCAACTTCATGCGCCGGGAGATCACCTCAGGTCCCGCCCAGAAAGTCGAGCTCAGCCCGCCTTC CCGGGCCAATGCATTCACCACGCCGCCCTGGGCGGTTTCGGCCAATAACCGCAGGGCACGGTAGAGATTCGATTTGCCGCTACCATTGGGCCCCGTGATC AGGTTAAGTCTGGCCAAGGGCACTACCAACTGGTTGATGGAGCGATAGTTGGCCACAGCCAGGGTGGTGAGCATGGATAACCTCGTAGCTTGAAAAGGAA CCGTAGCAGCGGCGGCAATAGAGTCCCACAGACGGTAAACCCTGTTCTACGCTATCAACCGTATCCGGATGTTAAATCAGCGTCACGCAAAGGAGCTTGC
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| DNA Sequence for Gene |
>TR67_RS18550
ATGGCTGGTCCACGAAACACAGGTATTTTGGGCTTGAGCCTTTTGGTGCTTCTGACCGCGTGCGGCAAAGAGGGTCCGAAGGAGCCTTTGTCCCCCAGGG TGTATGTGCAGCAGGTGAGCACTCGAGCGTTCGCTGCGCCCATTCAACTCAGCGGTGATATTCAGGCCCGGGTCGAAACCCAGCTGTCATTTCGCGTAGG TGGCAAGATTATCGAGCGCACGGTGGATGTGGGGGACCACATCCAGGCCCATCATGTGCTCGCCCGCCTCGACCCCAAGGACCTGAAGATTCAGGTCGAG ACCGCCCGGGCCAGTGTCGATGCGCAACAGGCGCAAGTGGTGCAAACCCGTGCTGCGTTTATTCGCCAGCAAAAACTGCTGCCAAAAGGCTACACCAGCC AAAGCGAATACGACGCCGCCAACGCCGCCCAACTGAGTGCAAAAAGTGCCTTGGATGCCGCGCAGGCACAGCTGGCCAACGCGCGCGAACAACTGAGCTA CAGCAACCTGGAAGCCGAAGCACCCGGCATCATCACCGCACGCCAGGCCGAGGTAGGCCAAGTGGTGCAGGCCACCATGCCGATTTTCACCCTGGCTCGC GATGGTGCAAGGGATGCGGTTTTCAACGTGTATGAATCGCTGTTTATCGAACCGCCCAAAGACCCCACGGTCCAGGTCACGCTATTGAGTAATCCGGCGA TCAAGGTCAACGGCCAGATCCGCGAAATAACCCCCACCGTGGCGGCACAAAGCGGCACGCTGCAAATAAAGGTGCAACTGGATGCATTGCCCAAAGGCAT GGACCTGGGCTCGATTGTCAGCGTCAACCTGACCCCGCCCCCCAGTCCCAGCATTGAGTTGCCGTGGTCGGCTTTGACCAAGGACATCAGCGAACCCGCG GTATGGATCGCCGACGAACAAAACAACGTGCGCCTGCAGCGGGTCAAGGTCGGGCGCTACCTGACCGGCAGCGTGATTGTCAGCGAAGGTCTCAAGGATG GAGAAAAAGTCGTGGTCGCAGGCGGGCAATTGTTACACCCCGGCATGAAGGTTGAAATCGTCCCCACTCCGGCCCAAGGAGTTCAACTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGTTTGTGGGTGATGCCGTTGGCCGCCGCCATGCTGGTGGGATGCTCTGAAAAACAGCCGCCAGAACCCATTCGACCGGCACTGTATGTGGTGGCACG ACCAGAGCTTGCTCAAGATCTGGGACGCTTTGCCGGCAATATCGAAGCCCGCTACGAGAGCACCTTGGGCTTTCGTGTTCCGGGGCGCATCGTGCGCCGG TATTACGACGTGGGAACGGTGGTCAAACAGGGCGACATTCTGGCTAACCTCGACCCCACCGATCAGCAAAATCAGTTGCGTTCGGCACAGGGCGATCTGG CCAAGGTGCAAGCCCAACTGATCAACGCCAAAGCCAACGCCCGCCGCCAGCAAGAGCTGTTCGACCGTGGTGTGGGCGCCCAGGCTCAACTGGACACGGC ACAAGCCGACCTCAAGACCACCCAGGCCTCGATGCAACAGGCACAGGCGGCGGTTAATCAGGCCCAGGATCAGCTCAGTTACTGCAACCTGCGCGCCGAC
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| Amino Acid Sequence |
>RND transporter
MAGPRNTGILGLSLLVLLTACGKEGPKEPLSPRVYVQQVSTRAFAAPIQLSGDIQARVETQLSFRVGGKIIERTVDVGDHIQAHHVLARLDPKDLKIQVE TARASVDAQQAQVVQTRAAFIRQQKLLPKGYTSQSEYDAANAAQLSAKSALDAAQAQLANAREQLSYSNLEAEAPGIITARQAEVGQVVQATMPIFTLAR DGARDAVFNVYESLFIEPPKDPTVQVTLLSNPAIKVNGQIREITPTVAAQSGTLQIKVQLDALPKGMDLGSIVSVNLTPPPSPSIELPWSALTKDISEPA VWIADEQNNVRLQRVKVGRYLTGSVIVSEGLKDGEKVVVAGGQLLHPGMKVEIVPTPAQGVQL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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