Strain | Pseudomonas deceptionensis strain DSM 26521 5_438339_49.8392, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACGTGGCTATAACCTGTAACCACCCCCAAAAAAAACCCGGTTCGCCGGGTTTTTTTTTGCCTGAAACAAGACGATTTTCGCGCCAAAGAAAAGATTTCTC CTGCGCGTTACAGGGGTCGACAAGTTCTACGCTTGTTTATGCGACGGGCGCTTGCAGCGCAACTCGACTATTAGCCGCTTTGCTTTTTTCTTCAGCACGC TAGAATGCGCGCCGAAGGGCAGAAAACAATGCTCGAGTACGACGAAGGCGAGGATGATCTCCCGACGCTTTCAAGGCCCGTGTGCCGTGCTGCTGGAGCA TCTGGCACTGGGCGCCTGGCAAAGTGTTTATTCAGGCGAACACCGTGATAATGGCGGTGTTCACCAAGCCCTCTTCACCTTACAACGATGAAGAGGTGTG AGCCGCGGTTTGCCCAAGGCTACTTTTTCACCAGTAGTGGTCGACAGTCGCCACAACTGGTCTATAACTAATCTGCTTTACGTATGTCATGGGGTAGAAC
|
|
DNA Sequence for Gene |
>TR67_RS18420
ATGAGCGACGACGATCTGGAAAATGATGACCTCGAAGTAGGCGAAGACGACGATACCGAAGAGGGCCTGGAAACGGCCGCTGAGGACGTTGCTGACGACG ACGGTGGCGAAGATGCGCCGGCCCCTGCGGCCAAAGGCAAATCCAAGGCTGCAGTGTCGGTTGATGACCTGCCCAGTGTAGAAGCCAAAAACAAGGAGCG TGATGCTCTGGCCCGCGCCATGGAAGAGTTTTTGTCCAAAGGCGGCAAGGTGCAGGAAGTTGAGGCCAACGTGGTGGCTGACCCACCCAAGAAGCCTGAC AACAAGTACGGCAGCCGCCCTATTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GGGCAAGTTGCTGGCTTGAAGAAAAAACCCGCCGTCGCTGCGGGTTTTTTTGTGCCCCCTGTGTAGCCGCTGACGAGGGACGAAGGCTGCGATCGGCGGC GAAGCCGTCGCAGATCAGACACCTCGGCGTTTCAGGGAAAATGAGCACTCAGGGTTTACGGCTGCTACGCAGCCGATCGCGGCCTCGCGCTGCTCGCCAG CGGCTACACGATTTTTGTTGTCGTTAGCCCAGTGTTTTCAACACCGCCGGTAATTCACTCAAGCAGCCAATCTCGGCGTCCGGGGCCTTGTCGCCGTCCC AGTGCTTGCCGCCCGGGTTGAACCACACCGCGCGCAAACCCGCCTGCTGGGCACCGGCAATGTCGTCTCCCGGGTGATCGCCTACGTGTACCGCTGCACC CGCCGCTACGCCACCGCGTAACAACGCCTCATGAAACAGGCGCGCATCCGGCTTGGCGATGCCGATGTCTTCAGCACACAGCACAAATTTGAAGTGGTGC
|
|
Amino Acid Sequence |
>hypothetical protein
MSDDDLENDDLEVGEDDDTEEGLETAAEDVADDDGGEDAPAPAAKGKSKAAVSVDDLPSVEAKNKERDALARAMEEFLSKGGKVQEVEANVVADPPKKPD NKYGSRPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|