Pseudomonas deceptionensis DSM 26521, TR67_RS10390
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 2_755170_40.3237, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCCCTTGTAGGAGAAGCGCGTAGTACCGTCTGGCATCAGGCCTTTACCCTGGGTAGCGCGAATCGCCTGACACAGGTTGGTTTTGCCAGACAGGCAGA ATTTGCACTGGCGACACTCAGGCGTGTACAGAGGGATCACGTGATCACCGACAGCAACCGAGGTCACGCCCTCGCCGATTGCCTCGACGATAGCGCCGCC TTCGTGGCCCAGGATCGACGGGAAGATGCCTTCCGGGTCAGCGCCCGACAAGGTGTAGGCATCCGTATGGCAAACGCCCGACGCCACAACCCGCAGCAGC ACTTCGCCAGCCTTGGGCATGGCAACGTCAACTTCTACGATTTCCAGCGGCTTTTTGGCCTCGAACGCTACGGCAGCACGTGACTTGATCATCGATCGTC TCCAGCAAAGTAAAAACAAGACGCCGAGTGTAAATCAGCGCTGAGTGATTAATAATCCGGGCAAAAGCAAAACATTATTGCCATACAGGGATAATCAGCC
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| DNA Sequence for Gene |
>TR67_RS10390
GTGAATGAAAACCGCTGGGAAGGCATAGACGAGTTTGTGGCCGTGGCCGAGTGCAGCCAATTCACTGCAGCGGCGGAACGCCTAGGGGTTTCATCGTCAC ACATCAGTCGCCAGGTGGCCCGCCTCGAAGAGCGCCTGCAAACCCGCCTGTTCTATCGCAGTACCCGAAAGGTGACGCTGACCGAAGCCGGGCAAACCTT TTTACAACATTGCCAGCGCCTGCAAGACGGACGCGAAGAAGCACTTCGAGCGGTCGGTGATCTGGCCAGCGAACCCAAAGGCATGCTACGCATGACCTGT GCGGTGGCCTATGGCGAGCGTTTTATCGTGCCGCTGGTTACGCGCTTTATGGGGCTGTATCCGCAGTTACGGGTCGATATAGAACTCAGCAATCGACCGC TGGACCTGGTGCATGAAAGCCTGGATCTGGCTATTCGGCTGGGGCGCTTGCAGGACTCAAGGCTGGTGGCCACGCGGCTCGCGCCCAGACGCATGTATGT CTGCGCGTCGCCTTCTTATCTGGAACATTATGGCCGCCCTCACAGCCTGTCGGAGCTGAGTCGACATAACTGTTTGATTGGCAGCTCGGATCTATGGCAA TTGCAGCAGGACGGGCGAGAATTTTCGCAAAGGGTGCAAGGTAATTGGCGCTGCAACAGCGGGCAGGCGGTATTGGACGCAGCACTCCAAGGTGTAGGGC TTTGTCAGTTACCGGACTATTACGTGCTTGAGCATCTGAAGACCGGGGCACTGGTGTCTTTGCTCGACACCCACCAGCCGCCCAACACTGCGGTTTGGGC GCTATACCCGCAACAGCGGCATTTATCGCCCAAAGTCAGAAAGCTGGTGGATTATCTGAAGGAAGGTTTGGCCAGACGGGAGGAGTATCAGGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGTGCCGCTCCTGTAGCCACTGACAAGGAACGAAGGCTGCGAAAAGGGCCGAAGGTCCTTCAATATCCAGTGGCCGCTTCGTACCTCGTCAGCGACAAAG GCTTACGGGCTTTGATTTTCAGCGATTTGCCCAGCGCAAGCGCAACCACTCAAGATCTTCGGGGCGGGTGACCTTGATGTTGTCCGAACGGCCTTCGATC AGACGCGGGGCCAGGCCGGCCCACTCCATCGCCGAAGACTCGTCGGTGATGGTCGCATCGGCCACCAGACTGTCAGCCAAGGCTCGGTGCAAGGCCCCCA AGCGGAACATCTGCGGCGTATACGCCTGCCAGATCAAGCTACGGTCAATGGTTTCAACCGCGCGACCATTTTTGTCCACGCGCTTGAGCGTATCCCGCGC CGGAACCGCCAGCAAACCACCCACAGGGTCGTCAGCCAGTTCGCTCAACAGCTTGTCCAGATCTTCGCGTGACAGGTTTGGACGTGCCGCATCGTGAACC
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MNENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLFYRSTRKVTLTEAGQTFLQHCQRLQDGREEALRAVGDLASEPKGMLRMTC AVAYGERFIVPLVTRFMGLYPQLRVDIELSNRPLDLVHESLDLAIRLGRLQDSRLVATRLAPRRMYVCASPSYLEHYGRPHSLSELSRHNCLIGSSDLWQ LQQDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDYYVLEHLKTGALVSLLDTHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEGLARREEYQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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