Pseudomonas deceptionensis DSM 26521, TR67_RS08000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 1_1862075_38.8261, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCAATTGCTGGATTTCCTACTGGCCGAAGAAGCCGCCGATCAACAGGTGATGCTCAGCGCTGCGGCGCGTCAGGCACTGCTGGACTTCACATGGCCGG GTAACGTACGCCAGTTGCGCAATGTGCTGCGCACCCTGGCGGCGCTGTGTGAAGACGGGTCGATCGAGTTCGACGACTTGCCCGCCAACATTCGTCTGGC ACCGTCCAGATCCCCTGAGCCTTCCGAGCGCCCGCTGGAAGATGCCGAGAGGTCGGCTTTGTTGGGTGTGCTGGAACTGCACCGCTGGCACATGACCCAT GCCGCCGAACAGTTGGGCGTCAGCCGCAACACCCTCTATAGAAAGCTGCGCAAGCATGGGATCGAGCGTTAGAGCCCAAAGTCCCTCACACCAACCCTCT CCCCCGGGAGAGGGTCAGGGTTTTAGACTGCAACCCTAATCATCAGGTGCGAAATACAGCCCTCTAAGCTACCCTTCGCCGATGATTTACGAGGTCGACT
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| DNA Sequence for Gene |
>TR67_RS08000
ATGCACATTCATATTCTTGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGTTGGCCAAAGAGCTGGGCCATCATGTCACGGGTTCCGACGCTAACG TCTATCCGCCAATGAGCACTCAGCTGCAAGCTCAGGGTATTGAACTGACCCAGGGTTACGACCCGTCTCAGCTCGACCCGGCGCCGGATGTGGTTGTGAT CGGCAACGCCCTGTCACGCGGCAACCCTGCCGTGGAGTATGTGCTCAACAAAGGCCTGCCTTATGTGTCCGGCCCGCAATGGCTGGCCGACCATGTGCTG CAAGGCCGCTGGGTGCTGGCCGTGGCCGGTACCCACGGCAAAACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAACACGCGGGCATGGCTCCGGGTT TCCTGATTGGCGGTGTGCCGCAAAACTTTGCAGTGTCGGCCCGTCTGGGCGATACGCCGTTCTTTGTGGTTGAAGCGGACGAATACGACAGCGCCTTCTT CGACAAGCGTTCGAAATTCGTGCATTACCGTCCCCGCACCGCGATCCTCAATAATCTTGAGTTCGATCACGCTGACATCTTCCCGGACTTGCCCGCGATC GAGCGGCAATTCCACCACTTGGTGCGCACTATCCCGAGTGAAGGCCTGGTCATTCATCCGACCACCGAACCCGCCTTGCAGCGAGTGATCGAAATGGGCT GCTGGACCCCGGTACAAACCACCGGCGCTGATGGCCAATGGCAAGCCCGTTTGCTCAGCGAAGACGGCTCGCGTTTTGAAGTGCTGTTTGAAGGCGCCGT GCAAGGTACCGTCGAATGGGACATGACAGGCCAGCACAACGTGGCCAACGCCCTGGCAACCCTGGCCGCCGCCCGCCATGTAGGCGTGGTGCCGAGCCTG GCGATTGATGGCCTGAACGCCTTCAAAAGCGTTAAGCGCCGCATGGAGAAAGTTGCCGAAGTCCACGGTATTACCATTTACGACGACTTTGCCCACCACC CGACTGCGATTGCGACCACCCTTGATGGTTTGCGCAAGCGCATCGGTGGCGCACCGCTGATTGCCGTTATTGAGCCGCGCTCCAACTCCATGAAGCTCGG CGCGCACCGTGACGGCTTGCCGCAAAGCGTGGTCCAGGCCGATCACGTGGTCTGGTACGCACCGGCCAATCTGGGTTGGGACCTGGCGGCAACTGTGGCG CCAAGCCCTGTACCGACCAAGGTTTGCGACTCGCTGGAAGCCATCATTGCCGAGGTTAAAGCTCACGCGATCCCAGGCGCTCACGTGGTGATCATGAGCA ACGGCGGCTTCGGCGGGCTGCATGGCAAGCTGGCGGAAGCGCTGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCCCGGAACGCATTACGCTGGCGGTGACCGGCGCATCGGGCATGCAATACGCGTTACGCCTGCTGGACTGTCTGGTACGTGAAGATCGCGAAGTGCA CTTCCTGATTTCCAAGGCGGCGCAGCTGGTGATGGCAACTGAAACTGACGTCAGCCTGCCGGCCAAGCCTCAGGCGATGCAGGCGTTTCTGACGGAATAC ACCGGGGCTGCCGCCGGGCAGATTCGGGTATATGGCAAGGAAGACTGGATGTCGCCAGTGGCTTCGGGGTCCGGAGCTCCGGCCGCGATGGTGGTGGTGC CTTGCTCAACCGGCACGCTGTCGGCAATTGCCACCGGCGCCTGCAATAATCTGGTGGAGCGTGCTGCGGACGTGACCCTCAAGGAGCGCCGCCAACTGAT CCTGGTGCCGCGTGAGGCGCCGTATTCCAGCATCCACCTGGAGAACATGCTCAAGTTGTCGAACATGGGGGCGATCATCATGCCCGCGTCCCCGGGTTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHHVTGSDANVYPPMSTQLQAQGIELTQGYDPSQLDPAPDVVVIGNALSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMAPGFLIGGVPQNFAVSARLGDTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGADGQWQARLLSEDGSRFEVLFEGAVQGTVEWDMTGQHNVANALATLAAARHVGVVPSL AIDGLNAFKSVKRRMEKVAEVHGITIYDDFAHHPTAIATTLDGLRKRIGGAPLIAVIEPRSNSMKLGAHRDGLPQSVVQADHVVWYAPANLGWDLAATVA PSPVPTKVCDSLEAIIAEVKAHAIPGAHVVIMSNGGFGGLHGKLAEALQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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