Pseudomonas deceptionensis DSM 26521, TR67_RS05005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 1_1862075_38.8261, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGGTTTGATGCAGCCGTGGCGGTTTATCCGCATCACCGACCGTGGGCTGCGTGGCAAGATTCAAGGCCTGGTCGAAGCCGAGCGGGTGCGTACTGCCG AGGCGCTGGGCCAGCGCTCCGATGAGTTCATGACCCTTAAGGTCGAAGGCATCAACGACTGTGCCGAGGTACTGGTGGCGGCATTGATGGATGACCGCGA AAAGCACATTTTTGGCCGACGTACCCTGCCGGAAATGGACATGGCGTCTTTGTCCTGTGCCATTCAGAACCTTTGGCTGGCCGCGCGGGTCGAGGGCCTG GGCATGGGCTGGGTGTCGTTGTTCGAGCCCGTGGCACTGGCGCACTTGCTGGGTTTGCCCGCCGGGGCCAAGCCGCTGGCGGTATTGTGTCTGGGCCCGG TTGAGGCCTTTTATCCGGCACCCATGCTGGTGCTGGAAGGGTGGGCGCAAGCGCGTCCGCTGAGCGAATTGGTGTATGAGAATTATTGGGGAGTAAGTCC
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| DNA Sequence for Gene |
>TR67_RS05005
ATGAGTGTGGCGTTGCTGTGCGTCGCCGGGGTGGCGCTTGATGCGCTGTTTGGTGAGCCCAAGCGCTGGCATCCGCTGGTCGCGTTTGGCCGCATGGCCG AGCGTATCGAGCAGCGTTTCAATTCCGGCGGACGTGGCTGGCGCAGTCATGGTGTGACGGCCTGGGTGCTGGCAGTGTTGCCTCTGACGATCCTTGCAAC GGCACTTTCATGGCTGCCGTATATCGGCTGGCTGGTGGAAATTCTGGCGCTGTATTGTGCGCTGGGCATGCGCAGTCTCGGTGAGCACGTGCAGCCGGTT GCCGAGGCGCTGCGTGCCAACGATCTGGAAGAGGCACGGACCCGGGTCGGCTATCTGGTCAGTCGCCAAACCAGCGAGCTGGACTCGACTGAAGTTGCCC GCGCTGCCACTGAATCTGTGTTGGAAAACGGCAGTGATGCGGTCTTTGCCACTATTTTCTGGTTTGTCGTGGCGGGAGCGCCAGGCGTGGTGCTCTATCG TTTGAGTAATACGCTGGATGCGATGTGGGGCTATCGAAACGAGCGCTTTGAGCGTTTCGGCTGGGCCGCTGCCCGTATCGACGATGTTCTTAACTATATT CCTGCAAGGTTGGTGGCGTTGACTTACGCCGTGTTGGGTAAAACCCGACTGGCCTTTAAGTGCTGGCGCAAGCAGGCACCCCAGTGGGACAGCCCCAATG CAGGCCCGGTAATGGCCGCAGGTGCAGGCGCGCTGGGTGTGGAACTGGGTGGCCCGGCGATTTATCACGGCGAGCTGCACGAGCGCCCGCAGTTGGGCGA AGGCGTGCCAGCAGATGCTGACTCGATTGGTCGTGGCTGGCAGTTGGTGCAGCGTGGCGTATGGCTGTGGCTGTTGGTTCTGTGCGCGTGGAGTGAATTC TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGCGGGCGTTTACGCAAGGCCGCGTTGCACTTCGGTATTGATGAGGCTGACTGGCTGGATTTGTCCACTGGCCTGGCGCCCTGGCCCTTTGATATT CCCCCGATACCCGAGCGTGCCTGGGCTCGTTTGCCTGAAACCGACGATGGTCTTGAGCAAGCAGCCTGTGCCTATTACGGCGCGCTGAGTGTATTGCCGG TGCCGGGCTCGCAGTGCGCGATCCAGCTGCTGCCGCGCCTGCGCCGCAGTGGCAAGGTCGGTGTGCTGTCGCCGTGTTACGCCGAGCATGCACATGCCTG GAGGCACAGCGGGCATATCGTGCGTGAAATCATGGAGCAGGAAGTCGATTTCTACCTCGACACGCTGGACGTGCTGGTGGTGGTCAATCCCAACAACCCT ACCGGGTTGAAGCTGTCGCCGGAGCGTTTGCTGGAATGGCATGCGCGGCTGGTGCAGCGCGGTGGCTGGCTGGTGGTGGACGAAGCCTTTATGGACAACA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLCVAGVALDALFGEPKRWHPLVAFGRMAERIEQRFNSGGRGWRSHGVTAWVLAVLPLTILATALSWLPYIGWLVEILALYCALGMRSLGEHVQPV AEALRANDLEEARTRVGYLVSRQTSELDSTEVARAATESVLENGSDAVFATIFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAARIDDVLNYI PARLVALTYAVLGKTRLAFKCWRKQAPQWDSPNAGPVMAAGAGALGVELGGPAIYHGELHERPQLGEGVPADADSIGRGWQLVQRGVWLWLLVLCAWSEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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