Pseudomonas deceptionensis DSM 26521, TR67_RS00030
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas deceptionensis strain DSM 26521 1_1862075_38.8261, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAACTTCGTCGATAACCAGGTCAACCCGAAGACCGGCACCATCCGTGGTCGCGCCGTGTTCGACAACACCGATGGCCGCTTCACACCGGGCCTGTATGC ACGCCTGAAACTGGTGGGCAGCGGGACCTATTCGGCCGTACTGATCAATGACGAAGCGGTCGGCACCGACCTTGGCAAGAAGTTCGTGCTGGTGATGGGC GCCGACAACACGTCGGCGTACCGCGCCGTCGACCTGGGACCGAAGATCGAAGGCCTGCGCATTGTTCGCAGCGGGCTGAGCAAGGACGACACCATCATCG TCAAGGGCTTGCAGAAAGTACGCCCTGGTTCGACGGTGACGCCTGAGGTGATCCCCATGGCCAACGAACAGACCCTCGCCGCACTGGCACAACAACGACA AGCCCTGGAAGCCAGCAACCTGCCACAAGTGAAGCCCGCCCAAAGCGCGCCGAAACTGGCCAGCGTCGCGACTCCTCGCGGTTAAGGGACGATAACTCCG
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| DNA Sequence for Gene |
>TR67_RS00030
ATGAATTTTTCCCAGTTCTTCATCCAGCGGCCGATTTTCGCCGCTGTACTTTCATTATTGATCCTGATTGCGGGCGGCATTTCGCTGTTCCAGTTACCGA TCAGTGAATACCCGGAAGTCGTTCCGCCTACCGTCGTGGTGCGCGCCAGTTTCCCGGGGGCCAACCCCAAAGTGATCGGCGAAACCGTCGCCGCGCCGTT GGAACAAGCGATTACCGGTGTTGAAAACATGTTGTACATGTCTTCGCAGTCCACCGCTGACGGCAAAATCACCCTGACCATCACCTTCGCGCTGGGCACC GACCTGGACAACGCTCAGGTGCAGGTGCAAAACCGTGTGACGCGTACGCAGCCCAAGCTGCCCGAAGAAGTGACGCGCATCGGTATTACGGTGGACAAGG CATCCCCCGATCTGACCATGGTTGTGCACTTGACCTCACCGGACAAGCGCTACGACATGCTGTACCTCTCCAACTACGCCATCCTCAACATCAAGGATGA ACTGGCGCGGTTGAACGGTATCGGTGACGTGCAAATGTTCGGTATGGGCGACTACTCGCTGCGCGTGTGGCTGGACCCGAACAAAACCGCATCGCGCAAC CTGACCGCCACCGATGTGGTGACGGCGATCCGCGAGCAGAACCGCCAGGTTGCCGCAGGTGCCCTGGGTGCCCCGCCCGCGCCGAACGCCGCTAGTTTCC AGCTCTCGGTGAATACCCAAGGCCGTCTGGTCACTGAAGAAGAGTTTGAAAATATCATTGTCCGCGCGGGCGATGATGGCCAGATCACGCGCTTGAAAGA CATCGCCAGAGTTGAACTGGGCTCCAGCCAGTACGCCCTGCGTTCGTTGCTGAACAACCAGCCTGCGGTGGCGATCCCGATCTTTCAGCGGCCGGGCTCC AATGCGATCCAGATTTCCAACGACGTTCGGGCCAAAATGGCCGAATTGAAGAAGGGCTTCCCGGAGGGCATGGACTTCGACATCGTGTATGACCCGACGA TCTTCGTGCGTGGCTCTATCGAAGCGGTGGTCCACACCCTGTTCGAAGCACTGATTCTCGTGGTGTTGGTGGTGATCCTGTTCCTGCAGACATGGCGCGC TTCGATCATCCCGCTGGTCGCTGTGCCCGTATCGCTGATCGGTACGTTCGCAGTGATGCACATGTTCGGCTTCTCGCTCAACGCTTTGTCGCTGTTCGGA CTGGTGCTGGCCATCGGCATCGTGGTGGACGATGCCATTGTGGTGGTGGAGAACGTCGAGCGAAATATCGAGCTGGGGCTCAACCCCGTGGACGCCACCA AGCGTGCGATGCGCGAAGTGACCGGCCCGATCATCGCCACAGCACTGGTGCTCTGCGCGGTGTTTATCCCGGCAGCCTTCATCTCGGGCCTTACCGGACA GTTCTATAAGCAGTTCGCCCTGACCATTGCGATTTCGACCGTGATCTCGGCCTTCAACTCGCTGACCCTGTCCCCGGCACTGGCAGCCGTCTTGCTCAAA GGCCATAACGCGCCGAAAGACCGCTTCACCCGCATACTGGATCGCCTGTTCGGCGGCTGGCTGTTTGCACCGTTCAACCGGTTCTTTGTTAAAGCCAGTA ACGGTTACGTTGGCACGGTACGTCGCATCATTCGCGGCAGCGGCATCGCGATGCTGGTGTACGCAGGCTTGATGGTGCTGACCTGGGCCGGCTTTGCCCA CACCCCGACCGGTTTTGTGCCACCGCAAGACAAGCAATACCTGGTGGCCTTCGCCCAACTGCCGGACGCCGCGAGCCTGGATCGCAGCGAAGAAGTGATC AAGCGCATGTCCGAGCTGGCCCTTAAGCAGCCAGGCGTTGCCAACTCGATCGCCTTCCCCGGCCTGTCGATCAACGGTTTCACCAACAGTCCGAACAGCG GCATCGTGTTTGTTGCACTTAAGGACTTTGACCAGCGCAAAGACCCGAGCCAGTCGGCTGCGGCCATTGCTGCCACGTTGAATGCCGAGTTTGCGGATAT TCAGGAAGCCTACATCGCGATCTTCCCGCCACCGCCGGTACAAGGCCTTGGCACCATCGGCGGGTTCCGCCTGCAAGTCGAGGACCGCGGTGGTCTGGGT TATGACGAACTGTACAAAGAAGTGCAGAACGTGATTACCAAGAGCCATAACGTGCCGGAACTGGCCGGGTTGTTCACCAGCTATCAGGTCAACGTGCCAC AAGTCGATGCCGCTATCGACCGGGAAAAAGCCAAGACCCACGGCGTTGCCATCAACGACATCTTCGACACCCTGCAGATCTACCTGGGCTCGCTGTATGC CAACGATTTCAACCGCTTCGGTCGTACTTATCAGGTCAACGTTCAAGCCGAACAGCAGTTCCGCCTGGAGCCCGAGCAGATTGGCCAGCTGAAAGTGCGC AACAACAAGGGTGAAATGATCCCGTTGGCGACCTTTATCAAGATCAGCGACACCGCAGGGCCCGATCGCGTGATGCACTACAACGGCTTTGTGACCGCAG AAATCAACGGCGGTGCAGCACCGGGCTACAGCTCGGGGCAGGCAGAAGCCGCGATGGAAAAACTGCTCAAAGAAGAACTGCCCAACGGCATGACTTACGA ATGGACCGAGCTGACGTACCAGCAAATCCTTTCGGGCAACACCGCACTGTTCGTGTTCCCGCTCTGCGTACTGCTGGCGTTCCTGGTACTGGCGGCTCAA TACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTACCGATGACGCTGCTGTCGGCGATTACCGGGGTGATTCTCTCGGGCGGTGACAACAACA TCTTCACCCAGATCGGATTGATCGTACTGGTGGGGTTGGCGTGCAAAAACGCGATTCTGATTGTCGAGTTTGCCAAGGACAAACAGGAAGAAGGCATGAG CCCGCTGGATGCGGTACTCGAAGCCTGCCGCCTGCGTCTGCGGCCGATTCTGATGACCTCGTTCGCGTTCATCATGGGTGTTGTGCCTCTGGTGCTGTCC AGCGGTGCCGGTGCTGAAATGCGCCACGCCATGGGTGTTGCCGTGTTCTCCGGGATGCTGGGTGTGACCTTCTTCGGCCTGTTGCTGACGCCGGTGTTCT ACGTATTGATCCGCCGCTATGTGGAGCGCAGTGAAGCGCGCAAAGCGGCCAAGCACCTCAAGTTGGAGTCGCAACAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGAAAGTCTTCCTGCCAAGTCTGCTGGTGCTGGCCTTGAGTGCCTGCGCCGTTGGCCCGGACTACCAAACGCCCAAGACCGAGCCGGCGCAGATCAG CGCCGACAACCTCAAGGGTTTTGACCGGGCGCATTTTGAAGGGATCTGGTGGCAGCAGTTTGACGACCCGACCCTCAACCAGCTGGTGACTGAGTCCCTG GCCGGCAACCGCGAGCTGCGCGTGGCGTTTGCCCGCCTGCGTGCGGCACGGTCGATTCGTGATGACGTCAGCAATGACGCCATGCCGACCATCACCAGCC GGGCCAGCAGTGATCTGGGCAAAGGCCAGATCCCCGGCACAACCGAAAAGCGGGTCAACAGTGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGAT CGACCTGTTTGGCCGCATCCAGCGCGAACTGGAAGCCAGCGATGCCGACGAGCAAACCGCCGCCGCTGATCTGTACCAGCTGCAAGTCACCATGATTGCC
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| Amino Acid Sequence |
>transporter
MNFSQFFIQRPIFAAVLSLLILIAGGISLFQLPISEYPEVVPPTVVVRASFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAILNIKDELARLNGIGDVQMFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPNAASFQLSVNTQGRLVTEEEFENIIVRAGDDGQITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIQISNDVRAKMAELKKGFPEGMDFDIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLNPVDATKRAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK GHNAPKDRFTRILDRLFGGWLFAPFNRFFVKASNGYVGTVRRIIRGSGIAMLVYAGLMVLTWAGFAHTPTGFVPPQDKQYLVAFAQLPDAASLDRSEEVI KRMSELALKQPGVANSIAFPGLSINGFTNSPNSGIVFVALKDFDQRKDPSQSAAAIAATLNAEFADIQEAYIAIFPPPPVQGLGTIGGFRLQVEDRGGLG YDELYKEVQNVITKSHNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAINDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLEPEQIGQLKVR NNKGEMIPLATFIKISDTAGPDRVMHYNGFVTAEINGGAAPGYSSGQAEAAMEKLLKEELPNGMTYEWTELTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVILSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRRYVERSEARKAAKHLKLESQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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