Pseudomonas cremoricolorata ND07, LK03_RS16800

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 312 412 2.34453E-7
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 600 844 6.8E-86
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 431 586 6.28E-46
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 422 582 4.6E-41
SMART SM00052 duf2_2 IPR001633 EAL domain 595 837 2.5E-103
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 427 580 5.3E-44
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 293 413 5.03E-18
CDD cd01948 EAL IPR001633 EAL domain 601 834 2.42551E-102
Pfam PF00563 EAL domain IPR001633 EAL domain 601 832 1.0E-68
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 284 846 0.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 291 420 9.6E-17
CDD cd01949 GGDEF IPR000160 GGDEF domain 427 583 3.38346E-58
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 599 850 3.2E-91
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 300 419 2.1E-8
Pfam PF05228 CHASE4 domain IPR007892 CHASE4 76 212 1.1E-11
SMART SM00091 pas_2 IPR000014 PAS domain 303 371 2.6E-7
SMART SM00267 duf1_3 IPR000160 GGDEF domain 415 585 3.1E-60
Pfam PF00989 PAS fold IPR013767 PAS fold 304 412 3.4E-6
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 421 598 3.5E-57

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.