Pseudomonas cremoricolorata ND07, LK03_RS10060

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0016310	phosphorylation	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00344	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016772	transferase activity, transferring phosphorus-containing groups	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00344	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00304	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0007165	signal transduction	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF47384	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0000155	phosphorelay sensor kinase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF47384	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF158472	HAMP domain-like	-	-	185	234	1.44E-6
PANTHER	PTHR43065	SENSOR HISTIDINE KINASE	-	-	205	665	1.9E-66
Pfam	PF00672	HAMP domain	IPR003660	HAMP domain	185	234	4.7E-7
Pfam	PF00512	His Kinase A (phospho-acceptor) domain	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	414	500	2.0E-9
Gene3D	G3DSA:1.10.287.130	-	-	-	397	497	4.9E-22
SUPERFAMILY	SSF47384	Homodimeric domain of signal transducing histidine kinase	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	408	502	2.55E-8
Pfam	PF08448	PAS fold	IPR013656	PAS fold-4	294	397	2.8E-8
SUPERFAMILY	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	493	665	5.76E-39
Gene3D	G3DSA:3.30.565.10	-	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	503	668	4.7E-39
SMART	SM00388	HisKA_10	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	412	502	1.2E-7
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	624	642	4.9E-16
SMART	SM00304	HAMP_11	IPR003660	HAMP domain	185	238	6.4E-7
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	IPR035965	PAS domain superfamily	275	395	4.71E-13
NCBIfam	TIGR00229	JCVI: PAS domain S-box protein	IPR000014	PAS domain	288	403	7.0E-6
Coils	Coil	Coil	-	-	226	260	-
Gene3D	G3DSA:6.10.340.10	-	-	-	154	244	5.9E-13
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	649	662	4.9E-16
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	611	621	4.9E-16
Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	IPR003594	Histidine kinase/HSP90-like ATPase	554	664	2.6E-23
SMART	SM00387	HKATPase_4	IPR003594	Histidine kinase/HSP90-like ATPase	550	665	6.4E-28
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	268	396	4.2E-13
CDD	cd06225	HAMP	-	-	188	233	6.38951E-6
SMART	SM00091	pas_2	IPR000014	PAS domain	287	355	1.5E-4
CDD	cd00082	HisKA	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	416	498	2.67835E-7
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	593	607	4.9E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.