Pseudomonas cremoricolorata ND07, LK03_RS06185 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cremoricolorata strain ND07, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGTTTTTGAAAAGACTTTGAGTGAGCTCGTTGAACTCGAAGGCCTGACCTTGAGCTATTACCGTGGTTGGGATAAAGATCGAGAACTTGCAGAAGTCCTC GCAGCCTCCCTCCATCGCGATCAGCACATGGGCCATACGCAAGCCGGTCCTCAGCGCGCGGATTTGCGCCTCAGACTAGGTGCCCACAATGCAGCCGATA TTCTCTCGCGTGGCCAGCAGAAGTTGGTTGTCTGTGCATTGCGTATTGCTCAAGGTCATTTGCTTAACCAGGCACGCCGCGGCCAGTGCATTTATCTCGT TGACGATCTGCCGTCCGAGTTGGACGAGCAGCACCGCCGCGCACTATGTCGCTTGCTTGAAGAATTGAACTGCCAGGTTTTTATCACCTGTGTAGACCAC GAATTTCTGAGGGAAGGCTGGCAAACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCCATATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>LK03_RS06185
|gyrB
ATGAGCGAAAATCAAACGTACGACTCTTCCAGCATCAAGGTGTTGAAAGGGCTGGATGCCGTGCGCAAGCGTCCCGGCATGTACATTGGCGATACCGATG ATGGCAGCGGCCTCCACCACATGGTGTTCGAAGTAGTCGATAACTCTATCGACGAGGCGTTGGCGGGACACTGTGACGACATCACCGTCATCATCCATCC TGACGAATCCATCAGCGTCCGAGACAACGGTCGGGGTATTCCGGTCGATGTCCATAAAGAAGAAGGTGTGTCTGCGGCAGAGGTCATCATGACCGTGCTG CACGCCGGCGGTAAGTTCGACGACAACTCCTATAAAGTTTCCGGCGGCCTGCACGGCGTAGGTGTTTCGGTGGTCAACGCCCTGTCCGAGAAGTTGATCC TGACCGTGCGCCGCAGCGGCAAGATTTGGGAACAGACCTACGTCCACGGTGTTCCCCAGGAACCGATGGCGATCGTGGGCGAAAGCGAAACCACCGGTAC CCATATCCATTTCAAACCGTCGGCAGAGACATTCAAGAACATCCACTTCAGCTGGGACATTCTTGCCAAACGTATCCGCGAGCTGTCGTTCCTCAACTCG GGCGTTGGCATTCTGCTGAAGGACGAGCGTAGCGGTAAGGAAGAGTTCTTCAAGTATGAAGGTGGCTTGCGTGCGTTCGTCGAGTACCTGAATACCAACA AGACCCCAGTCAACTCGCAGGTGTTCCACTTCACCGTACAGCGCGAAGACGGCGTGGGTGTCGAAGTGGCCCTGCAGTGGAACGATAGCTTCAACGAAAA CCTGCTGTGCTTCACCAACAACATTCCGCAGCGTGACGGCGGTACCCACTTGGTCGGCTTCCGCTCTTCCTTGACCCGTAGCCTGAACAACTACATCGAG CAGGAAGGTCTGGCGAAGAAGAACAAGGTTTCCACCACCGGTGACGATGCGCGTGAGGGCCTGACGGCGATCATCTCGGTCAAAGTCCCGGACCCCAAGT TCAGCTCTCAGACCAAGGACAAACTGGTGTCGTCGGAGGTGAAAACCGCCGTCGAGCAGGAGATGAACAAGTACTTCTCCGACTTCCTGCTGGAGAACCC CAACGAGGCCAAAGCAGTCGTCGGCAAGATGATCGATGCAGCGCGTGCGCGTGAAGCCGCCCGTAAGGCACGTGAGATGACTCGCCGTAAAGGCGCTCTG GATATCGCAGGTCTGCCGGGCAAATTGGCCGACTGCCAGGAAAAGGACCCTGCCCTCTCCGAACTGTATCTGGTGGAGGGTGACTCGGCAGGCGGATCGG CGAAGCAAGGCCGCAACCGTCGTACCCAGGCGATTCTGCCGCTCAAGGGCAAGATCCTCAACGTCGAGAAAGCCCGCTTCGACAAGATGATTTCGTCACA GGAAGTCGGCACGCTGATCACTGCGCTGGGCTGCGGTATTGGCCGTGAAGAGTACAACATCGACAAATTGCGTTATCACAACATCATCATCATGACCGAT GCTGACGTCGACGGCTCTCACATCCGTACCCTGCTGCTGACCTTCTTCTTCCGCCAACTGCCCGAGCTGGTCGAGCGTGGCTATATCTACATTGCCCAAC CACCGCTGTATAAGGTGAAGAAAGGCAAGCACGAGCAGTACATCAAGGACGATGAGGCCATGGAGGAGTACATGACCCAGTCGGCGCTCGAAGATGCCAG CCTGCACTTGGACGAGTCGGCGCCACCGGTATCGGGCATGCAACTGGAAAGCCTGGTCAATGACTTCCGCGCTGTGATGAAGACGCTCAAGCGTCTGTCT CGCCTGTACCCCGAAGAACTGACCGAGCACTTCATCTACATGAGCGAAGTGACCCAGGAACAGTTGGGCAACCATGAGCACATGCAAGCCTGGTTGGCCA ATTACCAGTCGCGCCTCGATCAAAGTCAGAAGTCCGGCCTGGCCTACAAAGCCAGCCTGCGTGAAGACAAGGAACGTAACGTCTGGTTGCCTGAAGTGCA GATCATCTCTCACGGACTGGCCAGCTACGTCACCTTCAACCGCGACTTCTTCGGCAGCAACGACTACCGCTCGGTGGTCAATATCGGCAACAAGCTCAGC ACCCTGCTCGGCGAAGGTGCCTATGTGAAGCGTGGTGAGCGTCGCAAGGCAGTGACCGAGTTCAAGGAAGCGCTGGACTGGCTGATGAACGAGTCGACCA AGCGCCACACCATCCAGCGCTACAAAGGCCTGGGCGAGATGAACCCGGATCAGTTGTGGGAAACCACCATGGACCCGGCCGTGCGTCGCATGCTCAAGGT CACCATCGAAGATGCCATTGGTGCTGACCAGCTGTTCAACACCCTGATGGGCGACGCAGTCGAACCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCG GTGTCGAACCTGGACTTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGACGTGTAATTGCACAACCCATTGCTCCGCAAAATAGAGGTCCGATGCTTTCAGCGCTAGGACCTCTGCAAAGCCCGCACTCGCGGGCTTTTTCTTTT TATGAAGTCTCAGATCTGGGTACTGTTCGTAAAGCCCTGGAAGGCATTCATGTCTATCTCACACCTGTCAGCAATCTTTCCGCCACATTACAAATCTGTA GGATTTCGCCGAAATGAGCGTCTTCGCGCTAACATTCTGCGATCCTCCGTTGTACATCGCGTGTGCACAAACCAGGCACCCGACCGCCCCTGAAAAACTC CCCCTCACCGCTTGGAATCCGTTATGCGCGTTCTGGTTGTCGAAGACGAAATCAAGACTGCCGAGTACCTTCAGCAGGGCCTATCCGAAAGTGGTTACGT GGTCGACATCGTGCATGACGGTATTGATGCACTTCACTTGTTCCACACCCATGACTATTCGCTGGTTCTTCTGGATGTGAATCTTCCAGGTATGGATGGT
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLILTVRRSGKIWEQTYVHGVPQEPMAIVGESETTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHFTVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNNYIE QEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD ADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKKGKHEQYIKDDEAMEEYMTQSALEDASLHLDESAPPVSGMQLESLVNDFRAVMKTLKRLS RLYPEELTEHFIYMSEVTQEQLGNHEHMQAWLANYQSRLDQSQKSGLAYKASLREDKERNVWLPEVQIISHGLASYVTFNRDFFGSNDYRSVVNIGNKLS TLLGEGAYVKRGERRKAVTEFKEALDWLMNESTKRHTIQRYKGLGEMNPDQLWETTMDPAVRRMLKVTIEDAIGADQLFNTLMGDAVEPRRDFIESNALS VSNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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