Pseudomonas cichorii JBC1, BH81_RS23135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGAGACGGCAATGGCATTTCCATCGAGTACAAGGAGTACGGCGTACGCCTGACGTTGACGCCTACCGTGGTCGGACGTGACCGTATTCTGCTCAAGGTCG CGCCCGAGGTCAGCGAGCTGGACTTCTCGGCAGGCATCACCATTTCCGGAACCACTGTGCCGGCACTCAATGTGCGACGTACCGACACCAGTATTTCCCT GGCCGACGGGGAAAGTTTTGTGGTCAGCGGCCTGATCAGCTCCAGCAATATCGCCTCGGTGGACAAGTTTCCGGGACTTGGCGATATCCCCATTCTGGGC GCTTTTTTCCGTAACTCGCAGATTCAGCGCGATGAGCGTGAGCTGCTGATGATCGTCACGCCGCATCTGGTGCAGCCTCTGGCGGTCAACGCCCAGTTGC CTACGCTGCCAGGCGAAGGCCTGCGCAATTACGATCCGAATTTCTTCCGTATGTATTTCCTCGAGAACGGTGATTTCGAGCGCCGTAGCGGGTTATCTCA
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| DNA Sequence for Gene |
>BH81_RS23135
ATGAGTCAGAGCCTGAGTCAGACATTCCTGGCGATTACCCGAAACCCCACTGATCTTGAATGGTTGCAGGGCGCTCTGGGATCGCTGGGTCAGGTGGTGA GTGCTGGCAGCGGCAGCCTGGACGATTTGCTGGCGCTGGTGGACGTGACCTTCGCCAGCGTGGTGTTCGTGGGGCTCGATCGTGAGCACCTGATGAACCA GAGCGCTTTGATCGAGGGCGCACTGGAAGCCAAGCCGATGCTGGCGATTGTTGCGCTGGGCGATGGCATGGATAACCAGTTGGTGCTCAATGCCATGCGC GCCGGAGCCAGGGATTTCGTGGCCTATGGCTCGCGCTCCAGTGAGGTTGCCGGTCTGGTGCGGCGCTTGAGCAAACGCCTGCCAGCGGTGACACCGAACC CCAACATGAGCGGTCTGTCGGTGTTGTATGGGGCTCAATGCGATGGTGACGGGGCTCTGATCGCCTCTCACCTGGCGATGGTGGTACAGAAGGCCGGACA GCGCACCTTGCTGCTGGATCTGGGCTTGCCCCGTGGCGACAGCCTGTCGATGCTCGGTCTTGAATCGACGTTCAGTTTTGGCGACGCACTGCGCCATTTG CGCAGGCTGGACGCGACCCTTATCGACAGTGCTTTCACCACCGCCGAGAACGGCTTGCGCATTCTTGCCTACACCGAGGCCGACGATCATCTGGAGCAGT CCAGTGCGGCCGAGCTTTACATGCTGCTCAGTGCCCTGCGCCAGCATTTCCAGCATGTCATCGTGAATCTGGTGGGCCAGCCGGACAGCGAAGCCCTGCG CACCTTTGTAAGCCACTGTGACCAGTTGCTGTGGTACGCCGACCAGAGCGTGATCGAGTGCCGACGCAATCTGGCGGTGCTCAATCTGTGGCGGGAAAAG GGCATGCGGATGCAGCACGCCGGGTTGTTGATCGACGGCTATCTGCGTTCGGTAGCGCCCAATTCGGAAACCGTGGGGAAAACCTTCGGCCTGCCGGTGA TTTCGGTCTTGCCGCTGAGCCCTGAATTGCGACTCAACGCGAAGAATCAGGGTGTTTCGCTGTTCGATCTGGCGCCCAGGGAAGCGCTGTGCGCGGGGTT ACGTCGACTTGGGGATCACCTGGTCCGTCATTCCGATGCTTATGAAAAACCCAGTGAAGGTTTCTTCGCTCGACTATGGGGGAATAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCGGAGAAATTGTTTGGCGTTGCTTCGCGTACCCAGGGCAGCACGGATGACGGGCAAGGGCTCAAGCTGGTGTTGCATCGCTACATCATCGATGGCAT CGAGGAGAGCGGCAAGAACCTGCTCGAAGGCTCGCGGCCGGTCCTGGCGCAGTTTGTGTTCGACAAGGTGGCTGAATATGTCGCCCGGTTGCGGCTGGCC ATTTCGCGTTATGAAATGGAGCGTCTTGCCGAGGAACTGGTCGACGAACTGACCGGCTTCGGCCCGCTGGAAGTGTTGCTGCGCGATACCGCAGTGACGG AAATTCTGGTCAACGGGCCGGGCAAGGTCTTTGTGGAACGTGACGGTATCTTGCACCACACCGACTTGCGTTTTATCGACTCGCACCACGTCGAGCGCGT CATGCAGCGCATTCTGGCGCCCCTTGGCCGTCGGCTGGATGAGTCCTCGCCCATGGTGGATGCGCGACTGCCCGACGGCAGCCGGGTCAACGCAATCATC
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| Amino Acid Sequence |
>pilus assembly protein
MSQSLSQTFLAITRNPTDLEWLQGALGSLGQVVSAGSGSLDDLLALVDVTFASVVFVGLDREHLMNQSALIEGALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPAVTPNPNMSGLSVLYGAQCDGDGALIASHLAMVVQKAGQRTLLLDLGLPRGDSLSMLGLESTFSFGDALRHL RRLDATLIDSAFTTAENGLRILAYTEADDHLEQSSAAELYMLLSALRQHFQHVIVNLVGQPDSEALRTFVSHCDQLLWYADQSVIECRRNLAVLNLWREK GMRMQHAGLLIDGYLRSVAPNSETVGKTFGLPVISVLPLSPELRLNAKNQGVSLFDLAPREALCAGLRRLGDHLVRHSDAYEKPSEGFFARLWGNK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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