Pseudomonas cichorii JBC1, BH81_RS22300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTTTCGGTGATGGCCAGTTTTTCGAGGTTGGCTTCGATACGATCTGCAATTTTCAGCAGCGTCAGCGAACGCTCTTGCACTGAGGTCGTGCCCCAGCCTG GCGCGGCGGCGTGGGCGGCATCCAGCGCCTTGTCGATATCCTCGGCGGTGGAGCGGGGGAATTCTGCGATGGGTTTGCCGGTGATAGGTGAGGTGTTGGT GAAGTATTGGCCTTTGACCGGAGCGACGAACTCGCCGCCGATGTAGTTACCGTAGCGTTCCCTGAAGTTGATGAGAGCGCCTTCGGTACCGGGATGTGCG TAACGCATGGTGAAGTCTCCTGATTCTTGTTGTGGGGAATTCAGCGTGGTCAAACCTGTGGCAGAGAGTAGCCAAGAGTAGGCCATTTATACCCGGTTCG GGAATGAAATTCAGGCACGGGCTTTCGCACTACCGGACAAAGACCGGGTGCCATTTCAGCGGTCCTGAGCTACCCTGCGCGGATGTTATAAGAGGTCATC
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| DNA Sequence for Gene |
>BH81_RS22300
ATGCATATTCATATCCTTGGTATCTGCGGCACGTTCATGGGCTCGCTGGCGGTACTCGCCAAAGAGCTGGGGCATCGCGTCACGGGCTCCGACGCCAACG TCTACCCGCCGATGAGCACCCAGCTGGAGGCTCAGGGCATCGAGTTGACTCAGGGCTATGATCCTGCCCAACTCGACCCGGCACCGGATCTGGTGGTGGT CGGCAATGCGCTGTCGCGTGGCAACCCTGCAGTCGAATATGTGCTGAATAAAGGTTTGCCTTATGTTTCCGGCCCGCAGTGGCTGGCCGACCATGTATTG CAGGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTTGAGCATGCGGGCATGAGTCCTGGCT TCCTGATCGGCGGCATTCCACAGAACTTCGCGGTGTCGGCGCGTCTGGGCGGCACGCCGTTTTTCGTGGTCGAAGCTGACGAATACGACAGCGCCTTTTT CGACAAACGCTCCAAGTTCGTCCATTACCGCCCGCGTACCGCGATCCTCAATAACCTTGAGTTCGATCACGCGGATATCTTCCCTGATCTGCCAGCCATC GAGCGACAGTTCCACCATCTGGTGCGCACCATCCCGAGCGAAGGGCTGGTCATTCACCCGACCACCGAGCCTGCCTTGCAGCGCGTCGTTGAAATGGGGT GCTGGACGCCAGTACAAACCACAGGCCAGAACGGCCAGTGGCAGGCGCGTCTGTTGAGTGAAGACGGCTCGCGTTTTGAAGTGCTGTTCGAGGGGCAGTT GCAAGGTGTGGTCGAGTGGGACATGACCGGGCAGCACAACGTGGCCAATGCCCTGGCGACCCTGGCGGCAGCGCGACACGTCGGTGTGGTGCCTGCGCAG GGCGTCGAGGCGCTGAGTGCTTTCAAGAGCGTGAAACGCCGCATGGAGAAAGTCGCAGAGGTTCGCGGCATCACTATCTATGACGACTTCGCTCACCACC CGACGGCCATCGCCACCACCCTCGATGGCCTGCGCAAGAAAGTCGCCGATGCGCCGGTGATCGCCATTATCGAACCGCGCTCCAACTCCATGAAGCTTGG CGCGCACCGCGATGGTCTGCCGGAAAGCGTGCAGCAGGCCGATCAGGTGGTCTGGTATGCACCGGCCAATCTGGGCTGGGATCTGGTCGCGACCGCTGCG CAATGTTCGGTGCCTTCGATCGTCAGCGATTCCCTTGAGGGGATCATCGAGCGAGTCAAAAGCCAGGCTCAGCCAGGGACCCATGTGGTGATCATGAGCA ACGGCGGCTTTGGCGGCCTGCACGGCAAACTGGCCGAGGCGCTGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCCCCGAGCGTATTACGCTGGCCATGACCGGTGCCTCGGGCGCCCAGTACGGCTTGCGCCTGCTGGATTGCCTGGTGCGTGAAGACCGGGAAGTCCA CTTCCTGATCTCCAAGGCCGCGCAACTGGTGATGGCGACTGAAACCGACGTGAGACTGCCGCCCAAGCCCGCAATGATGCAGGCGTTTCTGACTGAGTAC ACCGGCGCGACGGCCGGACAGATTCGCGTCTATGGTCGCGATGACTGGATGTCGCCGGTGGCCTCGGGCTCGGGCTCGCCCAGTGCCATGGTGGTGGTGC CGTGTTCAACGGGGTCTTTGTCGGCCATTGCCAGCGGTGCTTGCAACAACCTGATCGAGCGTGCAGCGGATGTCACTTTGAAGGAGCGCCGCCAGTTGAT TCTGGTGCCGCGTGAAGCACCCTTCTCCAGCATTCATCTGGAGAACATGCTCAAACTGTCGAACATGGGGGCGGTGATCCTGCCTGCCTCTCCGGGCTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLVVVGNALSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGIPQNFAVSARLGGTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVVEMGCWTPVQTTGQNGQWQARLLSEDGSRFEVLFEGQLQGVVEWDMTGQHNVANALATLAAARHVGVVPAQ GVEALSAFKSVKRRMEKVAEVRGITIYDDFAHHPTAIATTLDGLRKKVADAPVIAIIEPRSNSMKLGAHRDGLPESVQQADQVVWYAPANLGWDLVATAA QCSVPSIVSDSLEGIIERVKSQAQPGTHVVIMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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