Pseudomonas cichorii JBC1, BH81_RS20420

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas cichorii JBC1, complete genome. [Details]
DNA Sequence Upstream of Gene
CAGGCGACAACGCCGCCAAGGTCAAGCTGACTCTGGAAGACTCCAGCGCTTACCCACTGGAAGGCAAACTGGAGTTCTCGGAAGTCTCGGTTGATCAGGG TACAGGCTCCGTGACCCTGCGCGCTGTCTTCCCGAACCCCGAGCATCGTCTGCTGCCAGGCATGTTCGTTCACGCCCAGTTGCAAGCAGGTATCAGTGCC CAGGCCATCCTCGCTCCACAACAGGGTGTGACCCGCGACCAGAAAGGCACTCCGACTGCCCTGATCGTGAACAAGGACAACAAGGTCGAGCTGCGTACCC TGGTTGCCAACCGCACCGTAGGTAGCGAGTGGCTGATCGAAGAAGGCCTGAACGCCGGTGATCGTGTCATCACCGAAGGCCTGCAGTACGTAAAACCGGG CGCGGAAGTGAAAGTCGCAGAAGCAACCAACGTCAAAGGAGCTAACCCGGCGCCTGCCCCGGCCACTGAAAAAGCCGCTGGCAGCAAAGGGGAGTAACCC
DNA Sequence for Gene
>BH81_RS20420
ATGTCGAAATTTTTTATCGATCGCCCGATTTTCGCCTGGGTAATCGCCCTGGTGATCATGCTGATCGGCTCCCTGTCGATCCTCAGCCTGCCGATCAACC AGTACCCAAGCATCGCACCGCCAGCCATCGCGATTCAGGTGACCTACCCGGGCGCTTCTGCACAGACCGTGCAGGACACTGTGGTGCAGGTCATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGCTATGTCAGTTCGGAAAGTAACTCCGACGGCAGCATGACCATCACTGCGACCTTCAATCAGGGTACCAACCCG GATACGGCGCAGGTTCAGGTGCAGAACAAGCTGAACCTGGCCACACCGTTGCTGCCTCAGGAAGTACAGCAACAAGGCATCCGTGTAACCAAGGCAGTGA GAAACTTCCTGATGGTTATCGGCCTGGTGTCCGAAGATGGCAGCATGGGCAAGGAAGACCTGGCCAACTACATCGTGTCGAACATGCAGGACCCGATTTC CCGGACATCCGGCGTGGGTGACTTCCAGGTCTTCGGTGCCCAGTACTCCATGCGTATCTGGCTTGACCCGGCCAAGCTGAACAACTTCCAGTTGACCCCG GTCGATGTCAGCAACGCTATCACTGCCCAGAACGTCCAGGTGTCTTCCGGTCAACTGGGTGGCCTGCCCGCCATCAGCGGCCAGCAACTTAACGCAACCA TCATCGGCAAGACCCGTCTGCAGACCGCAGAGCAGTTCGGCAATATTTTGCTGAAGGTCAACGCCGATGGTTCTCAAGTGCGCGTCAAGGATGTCGCCAC CGTGGGCCTGGGTGCAGAAAACTACAGCGTCGACTCCCAGTTCGACGGCAAACCCGCTTCCGGCCTGGCGATCAAGCTGGCACCCGGCGCCAACGCCCTG GACACTGCCAAGGCCATCCGCAAAACCGTTTCATCGCTTGAGCCGTTCTTTCCGCCAGGCATGAAAGTCGTCTACCCGTATGACACCACCCCAGTGGTCA GCGAGTCGATTTCCGGGGTTGTTCATACTCTGGGCGAAGCGATTGTCCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACTTCCGTGCCACGGTCAT CACCACACTGACCGTGCCCGTAGTCTTGCTGGGTACCTTCGGCATCCTCGCGGCCTTCGGTTTCACCATCAACACCCTGACCATGTTCGGTATGATCCTG GCCATCGGCTTGTTGGTGGACGACGCCATTGTCGTGGTGGAAAACGTCGAACGGGTCATGGCAGAAGAGAAACTGTCCCCCAGGCAGGCAACCATCAAGT CCATGGAGCAGATCCAGGGTGCATTGGTGGGTATCGCACTGGTTCTGTCGGCGGTTCTGTTGCCAATGGCGTTCTTCGGTGGTTCAACCGGGGTGATCTA CAAACAGTTCTCGATCACCATCGTATCGGCGATGGCGCTTTCGGTGGTGGTGGCCCTGATCTTCACCCCTGCCCTTTGCGCCACGATGCTCAAGCCCATC GATCACGAGAAGCATGGCCAACCCAAGCGCGGGTTCTTCGGCTGGTTCAACCGCACCTTCGACCGCAGCGTAGAAAGCTACGAGCGCGGCGTGGGCAATA TGCTCAAGCATAAATTCCCGGCGTACCTGGGCTATGTCCTGATCTGCGTTGGCATGATCTGGATGTTCACCCGTATTCCGGCTGCGTTCCTGCCAGAAGA AGATCAGGGCGTACTCTTCGCCCAGATCCAGACGCCGGCCGGTTCGTCGTCGGAGCGTACACAGCAAGTCATCGACAATATGCGCGATTACCTGCTGACC AAGGAAAGCGGCGCCGTCAAATCGGTGTTCTCGGTCAACGGCTTCAACTTCGCCGGTCGCGGCCAGAGCTCTGCGATTGCGTTCGTGATGCTCAAGCCAT GGGATGAACGTTCGGCTGAAAACAGCGTTTTCGAGCTGGCCAAGCGTGCCCAGGCACACTTCTTCAGCTTCCGCGATGCCATGGTGTTCGCCGTAGTCCC TCCATCGGTTCTGGAACTGGGTAACGCCACCGGTTTCGACGTTTACCTGCAAGACCAGGGTGGTGTGGGCCATGAAAAACTCATGGAAGCACGTAACCAG TTCCTGGGCATGGCGTCCCAGAGCAAGGTTCTGGCAGGCGTACGTCCCAACGGTCTGAACGATGAGCCGCAGTACCAGTTGATCATTGATGACGAACGGG CCAGCGCCCTTGGGATAACGCTGTCGGACATCAACAACACTCTGTCGATTGCCCTGGGTGGTCGCTACGTCAACGACTTCATCGACCGTGGTCGTGTGAA GAAGGTGTACCTGCAAGGCGACTCTGGCGCCCGGATGACCCCGGAAGACCTGAACAAATGGTACGTGCGCAACAGCGCGGGCGAGATGGTGCCGTTCTCG GCATTCGCCAGCGGCAAGTGGGTCTACGGCTCGCCTAAACTGTCACGCTACAACGGCGTGGCAGCGGAGGAAATTCTCGGTACACCGGCTCCGGGCTACA GTACCGGCGAGGCCATGGCCGAAGTAGAAGCACTGGCCAAGAAACTGCCACCTGGCATCGGCATCTCCTGGACAGGTCTGTCCTATGAGGAGCGTCTGTC CGGGTCGCAGGCACCTGCGCTGTATGCACTTTCCCTGCTGGTGGTCTTCCTCTGTCTGGCAGCGCTGTATGAAAGCTGGTCGATTCCGATCGCGGTCATG CTGGTAGTTCCACTAGGCGTCATCGGTGCGTTGATCGCAACCAGCATGCGCGGCCTGTCGAACGACGTGTTCTTCCAGGTAGGGTTGCTGGTGACAGTCG GTCTGGCTGCGAAAAACGCCATCCTCATCGTGGAGTTCGCCAAGGAACTCCACGAGCAGGGGAAAACCCTGACTGACGCTGCAATTGAGGCTTGCCGGAT GCGCCTGCGTCCGATCATCATGACCTCCATGGCCTTCATCCTGGGTGTTGTCCCACTGACAATCTCCACGGGCGCAGGCTCGGGCAGCCAACACTCGATT GGTACAGGCGTCATTGGCGGTATGATCACCGCCGTCGTACTGGCCATCTTCTGGGTGCCACTGTTTTTCGTATCGATATCGGCGCTCTTCAAGAGCAAGC AGAAACCTATCTCTCACGATGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCCCTGATTTCTCTGGCAGTTACCGCGTTCATTCTCAGCGGCTGCTCCCTGATTCCCGAGTACAAGCAGCCGGAATCACCGGTTGCAGCACAGTA CCCGCAAGGTCCTGCCTACCTGCCGGCCGAAAACGCCGAAAGAGCGGCCGCCGAGCAAGGCTGGCGTCAGTTCTTCCGTGACCCGGCACTGCAACAGCTG ATCCAGACGGCACTGGTCAACAACCGTGACCTGCGGGTCGCGGCCCTGAACATCGACGCTTACCGCGCGCAATACCGCATCCAGCGTTCCGACCTGTTCC CGGCCGTCTCGGCCAATGCCACGGGCTCACGCCAGCGCGTGCCAGCCGACATGTCCACCAGTGGCGAGGCCGGCATCACCAGCTCCTACTCGGCAAACCT GGGTATCAGCTCCTATGAGCTGGACCTGTTCGGTCGTGTGCGCAGCCTCAGCGATCAGGCCTTGCAGACCTACTTCGCCAGTGAAGAAGCACGCCGCAGC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLIGSLSILSLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVRNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGAQYSMRIWLDPAKLNNFQLTP VDVSNAITAQNVQVSSGQLGGLPAISGQQLNATIIGKTRLQTAEQFGNILLKVNADGSQVRVKDVATVGLGAENYSVDSQFDGKPASGLAIKLAPGANAL DTAKAIRKTVSSLEPFFPPGMKVVYPYDTTPVVSESISGVVHTLGEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAAFGFTINTLTMFGMIL AIGLLVDDAIVVVENVERVMAEEKLSPRQATIKSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPI DHEKHGQPKRGFFGWFNRTFDRSVESYERGVGNMLKHKFPAYLGYVLICVGMIWMFTRIPAAFLPEEDQGVLFAQIQTPAGSSSERTQQVIDNMRDYLLT KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWDERSAENSVFELAKRAQAHFFSFRDAMVFAVVPPSVLELGNATGFDVYLQDQGGVGHEKLMEARNQ FLGMASQSKVLAGVRPNGLNDEPQYQLIIDDERASALGITLSDINNTLSIALGGRYVNDFIDRGRVKKVYLQGDSGARMTPEDLNKWYVRNSAGEMVPFS AFASGKWVYGSPKLSRYNGVAAEEILGTPAPGYSTGEAMAEVEALAKKLPPGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIAVM LVVPLGVIGALIATSMRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKTLTDAAIEACRMRLRPIIMTSMAFILGVVPLTISTGAGSGSQHSI GTGVIGGMITAVVLAIFWVPLFFVSISALFKSKQKPISHDEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site