Pseudomonas cichorii JBC1, BH81_RS19625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCTGGCAGATGGGTGGCCTTGGGCCGATGGCAGGCCAGAATCACCACTTCAACCGCTTCGCCAAGGAAAAGATTCCTTATGCGATCAAACGCTATGTGG ATGAAACCGCCCGTCTGTACGGCGTACTGAACAAGCGTCTGGCCGACCGTGACTTTGTGGCTGGCAGCGAGTACAGCATTGCAGACATGGCGATCTATCC ATGGATCGTGCCGCATACCTTTCAGCAGCAGAACCTGGATGACTTCCCTCACCTCAAGCGCTGGTTCGAAACCATTGCCGGGCGTGAGGCTACCCAAAGG GCGTATGCGCTGGTCGAGCAGATCAATCCACAGAAGCCTTGATGATGCTCTTCGCGAATGAATTCGCTCCTGGCCGGCTGGGGGTGGATTCATTTGCTTT GTAAAATCCTGAAATAAACTCCCCTTCCCGTCTTGCGTGGCGCCTGTCCGCTCTCTAACGTAGCGACCTTTACATACGCCACCCCCGCGGGAGTTTCGCC
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| DNA Sequence for Gene |
>BH81_RS19625
ATGGCCTCGCCAGCCCCTTCATTTTTCCTGAGCCGATTCAGTGCAGCCGCCATTGCGGCGAGTTTCCTGAGCCTTGCGGGCTGCCAGTTGGGCGGTGGTG ACAACGAGACATTGCTGCCCGCCTCCGGAGTATTCCCGGTCAAGGGGCTGGCACAGAACGTATCGGTACGCCGCAACAATCTGGGCATGCCCCTGATAGA AAGCAGCACATACCACGACGCGCTGTTCACGCTGGGCTATGTACATGCCGCTGACCGCATCACGCAAATGGTCGGCATGCGCCTGCTGGCGCAAGGGCGT CTGGCGGAAATGGCCGGGGCCGATGCTCTGGAAGTCGACCGCCTGATGCGCTCGGCCAGGCTCAAGCAACGCGCCAGCGAGCTTTACAACGCATCATCGC CGCGCCTCAAACGCTTTTTCGAGGTCTATGCACGGGGCGTCAACGCCTACCTGTTCCGCTATCGCGACAAGTTGCCAGAGGACCTGGCCAGCTCCGGCTA TCGCCCGGAATACTGGCAGCCCGAAGACTCGGCGCTGATCTTCAGTCTGCTGAGCTTCAATCTGTCGGTGAACCTGCAGGAAGAACTCTCGGCGCTGGTG CTGGCACAGAAAGTCGGCAGCGACAAACTGGCCTGGCTGCTGCCGACCTATCCCGACGAAGCGCTGCCCTTCTCGGAAGCCGACAAGCTCAAGGGCCTGA GCCTCAACAATCAGGTGCCTGAGTTGAACGACCTGACCAGGGTCGCACTGCAGCTTTCCGATCTGAACATGCTGGGCGCAGCCGCCGCCAGCAACTGGGC CATCGCGCCGCAGCGCAGCCGTAATGGCAAAAGCCTGCTGGCCAGCGAAATGCAACTGCCTGCCGGGATCACCTCGGCCTGGAGTTTCGTGCAGTTGCGC GCACCGAAGTATCAGGCGTCTGGCGCCTCGATTGCCGGCCTGCCGCTGGTATTGAGCGGCTTCAACGGCAAGCTGGCCTGGAGCCTGAGCAACGTCAAGG GCGACAATCAGGACCTGTTCCTGGAAAAGCTCAAGCGCGAAAACAATCGCCTGTTCTATATGGCTGACGGCAAATGGCAGCCCGCTATCGCCTACGAAGA AACCTTCCTGGCCAAAGGTGGCCGTCCGCTGCGTGAAACCGTGTATGCCACGCGCCACGGTGTACTGCTCAACGCCAGCGCCACCCCGCTGGGCAACGGC CTGGGCCTGGCCCTGCAAACCCCGGACTTCAAGGACGACAAGAGCCTCGATGCCTTTTTCGACCTGTCCCGTGCGCCCAACGTAGAGAAAGCTTTCGACA CAACCCGCGAGATTCGTGCAATCACACTGAACATGGTGTTCGCCGATGCCTCGAATATCGGCTGGCAAGTCACCGGCCGCTACCCGAACCGTCGTGAAGG TCAGGGCCTGCTGCCTTCTCCGGGCTGGGACGGCACGTTCGACTGGGACGGTTTTGCCGACTCGATGCTGCACCCTTACGATCAGGACCCGCGTCAGGGC TGGATAGCGACCGCCAATCAGCGCACAGTGCCCAAAGGCTACGGCATGCAGTTGTCCAATTCATGGGGTTACCCGGAGCGGGCCGAGCGCATTGCCGAGC TGGCCAACAGCGGCAAGCAGGACACCCGCAGCACCATCGCCATGCAATACGACCAGGCCACGACTTTTGCCGCCAAGCTCAAGAACATGTTTGAAGCGCC AGGCATGACCAAACCGCTCAAGCAGGCCATCGACGCTCTGCCCGAAGCCGAGCGGGCCAAGGCTCGGGAAGCCTACAGCCGCCTGATGGCCTTCGACGGC AAGCTCACCCCGAACTCCGCCGATGCAGCACTGTATGAGCTGTTTCTGCAGGAAAGCGCCAAGCTGACCTTCCTCGATGAGCTGGGTCCGGAAAGCAGCC TGGTCTGGCAAGCCCTGAGCGCCAACGCCAGCTCGTCCTACTCGCCACAGGCCGATCATTTGCTGGGCCGTGAAGACAGTCCTTTCTGGGACGACCTCAA AACCCCGCAAAAAGAAGATAAGCCCGCCATTCTGGCTCGCAGTCTGGCAGCCGCCATCACCGCTGGCGACAGCCTGCTGGGCACAGACCACAAGGCCTGG CAATGGGGCAAGCTGCATCGCGAGAACTGGACGGCACAAACCAGCCCTCTGGCCAAAGCCTTGGGTGGCAACCACTTCAATCGCAGCGCCAGCGCAACAG GTGGGGATCACAGCACCATCAATGTTTCGGGCTATGAGTGGGGCAAGGGCTTGGATACTCACGCGACGCCTGCCTTGCGCATGATCGTCGACTTCAGTCA GGCAGAGCCCATGATGGGCCTGATCAGCACCGGCCAGTCGGACAACCCGGCCAGCCCGCACTACGCCAACAGCATCGAGCCGTGGATCAAGGCGCAGTAC CAGACGATTCCGCTGCAACAGTCCAACTATGAAAAAGGCTATGGCAAACAGCGCCTGACCCTGACGCCCGGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCTCACAAGGCACCAAAATGGAGCGGCGCGCGCGTGACGCCCCATTTTGGACAGCCCTCTTGAACAACAATCATCCCTGTCGTCCAGACCATACACAGC ACGTCCAATCCAGCGGCTTCTGCGTGCGCAGGCCGAAACACCGATGATGGCAAGCTAATGCAGCATTGCGACAACTGTTTATATTTAAAACGCACGTTCG TCTCTTTGGTTCGGAAATTGCTACTTCTTGCCCGTCTGGCATCCGCCGGTAGCAAGCCTGGCGTGTTCTCTACGCTCAATCTGGTTAAGGACTGAATAAT GAAAAAAGCATGGCTGACCCTTTCCGCACTGGCTCTGTGCCTGGCCGCTGGTAGTTCCATGGCCAAGGAATACAAGGAGCTGCGTTTTGGCGTCGATCCT TCCTACGCTCCTTTCGAGTCGAAAGCCGCTGACGGCAGCCTGCAAGGCTTCGATATCGACCTGGGCAATGCGATCTGTAAAGAACTGAACGTGACCTGCA
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| Amino Acid Sequence |
>acyl-homoserine lactone acylase subunit beta
MASPAPSFFLSRFSAAAIAASFLSLAGCQLGGGDNETLLPASGVFPVKGLAQNVSVRRNNLGMPLIESSTYHDALFTLGYVHAADRITQMVGMRLLAQGR LAEMAGADALEVDRLMRSARLKQRASELYNASSPRLKRFFEVYARGVNAYLFRYRDKLPEDLASSGYRPEYWQPEDSALIFSLLSFNLSVNLQEELSALV LAQKVGSDKLAWLLPTYPDEALPFSEADKLKGLSLNNQVPELNDLTRVALQLSDLNMLGAAAASNWAIAPQRSRNGKSLLASEMQLPAGITSAWSFVQLR APKYQASGASIAGLPLVLSGFNGKLAWSLSNVKGDNQDLFLEKLKRENNRLFYMADGKWQPAIAYEETFLAKGGRPLRETVYATRHGVLLNASATPLGNG LGLALQTPDFKDDKSLDAFFDLSRAPNVEKAFDTTREIRAITLNMVFADASNIGWQVTGRYPNRREGQGLLPSPGWDGTFDWDGFADSMLHPYDQDPRQG WIATANQRTVPKGYGMQLSNSWGYPERAERIAELANSGKQDTRSTIAMQYDQATTFAAKLKNMFEAPGMTKPLKQAIDALPEAERAKAREAYSRLMAFDG KLTPNSADAALYELFLQESAKLTFLDELGPESSLVWQALSANASSSYSPQADHLLGREDSPFWDDLKTPQKEDKPAILARSLAAAITAGDSLLGTDHKAW QWGKLHRENWTAQTSPLAKALGGNHFNRSASATGGDHSTINVSGYEWGKGLDTHATPALRMIVDFSQAEPMMGLISTGQSDNPASPHYANSIEPWIKAQY QTIPLQQSNYEKGYGKQRLTLTPGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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