Pseudomonas cichorii JBC1, BH81_RS15500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCTGGCGTATCGGCTGACTCCGGCTACACCGTGCCGTCCAACGATCAACTGGGTGTTGCAGGCCGCGCCATCTGGGATGCACGCGCCTCCTGGAAGCT CGACGAGCACTGGACCGTCGCTCTGAACGCCGACAACCTGTTTGATCGCAAGTACTACACCACAGCCGTGGCTCTGGACCGCTCCAACCTGTACGGCGAA CCACGCAGCTACGTCCTGACCCTGCGCGGCGACTTCTGATCCTGCGCAGAATCTGCGGATAAACCGATCCACAGGGCACCACAAAAAGACCAGAGGGCAG CCTCTGGTCTTTTTTATTGAAAGACTTACTAAATTAATTCCTGCCTCATTCGTATGAATTCCTTATGAGCCACGTTGAAAAATCGCCTGGTAAAGGATGA CCAGAGGCAGTGCCCCATACGACGGTATGGTTTACCCTGCGTCATTGATCGAAGAGCCATCACCATGCAATCACGCACCCGCCCTCCACTGCCTGCCCGC
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| DNA Sequence for Gene |
>BH81_RS15500
CTGCTGCTCCAGCCAAGGCCTGCGATAAGAGTGATAGGGTTTGCGCTGCTGATGACGTTCAAGGCAGAGGCCTTGGCGCAGGAGATCGAATTCGATATCC CAGCCCAACCCTTGAACAGCGCCCTGAATGAACTGGGGCGCCAGGGTGATCTGCAGGTGCTGTACAACCCGGACGATATCAAGGGCAAAAGCAGCCAGGC CGTGCGCGGCAGATTTACCCTAGAGCAGGCAGCCAGAAACCTGCTCGATCAGGCCAGAGTGCCTTATAGCCTTGAGAACAACACCCTGACACTGACCGCC ATTATTCCTCCGGTCAGCCTCAAGCCCCTGTCGATTCAGGCACCACCGGCAGGTCTGATTACCGAAGGTTCGGGCTCTTACACCACGTCCGCAGTGAGCA TCACCAAAAGCGCCCAGTCCCTGCGTGAAATTCCGCAGTCGGTGAGTGTCGTGACCCGCCAGTTGATGAACGACAAGAACCTCTACAGCCTGGAAGACGT GATGGCCCAGGCCACCGGCGTCACTTTTTCCCAACGCAATTTCGGCTCCCATGTCTTCAGCTCACGCGGCTTTGCCATGGAAGACGAGAGCTACACCATT GATGGCATCTCCGGTCAGGGCTACAGCGTGACCGGCTGGATGACGCCCGATATGGAAATCTACGACCGGGTGGAAATCCTGCGGGGCGCGGCCGGGCTGC TGATCGGCGCGGGCAACCCCGGCGGCACGGTGAATCTGGTGCGTAAACGCCCGACCGCCATACCGCAGTTTTCAATAACCACCCGCACCGGCACCTGGAA CAACAACCGGGTGGATCTGGACGGCAGCAGCAAACTGAACGACTCGGGCAGCATCCGGGGCCGCTTCGTGGCGTCTTATGCCGACCGTGACTACTTTATC GATGGCCTCAGCAAATCCGCCCCGCTGTTGTACGGCATCCTCGAAGCCGACCTGAATGACGACACCACCCTGGCTGTGGGCGTTCGCCGTCAGGAAGCCG ATATCAAAGGCTTCACCATCTTCGGCCTGCCCCGCTACAGCGATGGCAGTGCCCTGGACGTACCACGCTCGACTTCACTGGCCCAGGACTGGAACCGTCA CCAGACCCGCACGGACGAAGTGTTCACGGAACTGGACCATCACTTCAGCGAGAACTGGTCGGGCACACTGTCTGCCACCCATTCAACGGGTTCGTTCGAG CAGAAAGTGGCCTATGCCCAGGGCGCCATCGATCCGGCGACATTGACCGGTTCCCGTATCGCCCGAACCCTGTTCCGCTCCGACCAATTGCACAGCAACG GTTTCGATGCGCACATGGACGGTCATTTCGAGGCGTTCGGCCTGGAACACCAGCTAACCTTCGGCGGCAACTGGTCGGAGCAGATGCGTAAGTCCAGCCA AGTCAATGTGACATCCAACCAGCCCATCGATGTATTCGACCCCGACAGCCACCTGATTGCCGAACCGGCCCAGCCCGACTGGACCTCCATCACCGACTTC AGTGACAAACGCTATGGCGCTTACGCCAATCTGCGCCTGCATCTGTCGGAGTCGTTGAGTCTGGTCATGGGCGGTCGCCTTAGCTGGTATGACTACCAGA CCCAGGCAGCGAGCGTCACTCGTAAATCCATAGAGCAACATGAACTCACGCCTTTCATAGGCACGATCTACGACCTGAATCCCGACTGGTCCCTGTACGC CAGTTACACCGATATCTTCCTGCCGCAAAGCGTGTACCGGGATGCTGCTGGCAACCTGCTGAAACCGGCCATCGGCGCAAACTACGAAACCGGCATCAAA GGCGAACTCTTCGAGCAACGCCTGAATCTTTCCTTTGCGATGTTTTACGTCAAGCAGAAGGATGTGGCGGTGGAAGACAACGCCAATCCTGGCGAATGCC TGATGAACGATATCTACGGCACCTGCTACCTGAACGGCAATATCCGCCGCAGCAAGGGGTTTGAAGTAGAAGCCAGCGGCGAACCCCTGCCCGGCCTGCA AACCGTGGCGGGTTATACCTTCAATATGACCCGTGGCAGCGACGGCCAGTCCATTTCGGCCGAAACACCCCGACACCTGTTTCGCATGACCGGCAACTAC ACCCTGCCCGGCACCTGGAACCGCCTGACCCTCGGCGCCGGGGTTTCCGCACAGAGCGGCTATTCGGAAGCCGAATCATCAGCAGAAATCAAAAACCCCG GCCGCGCCATCTGGGACGCCAGAGCCTCCTGGAAAATAGACGAACACTGGAGCGTGGCCCTCAACGGCAACAACCTGCTGGATCGCAAGTATTACAAGGC GACCGGGGATGTGGACCGAGGAAATTATTACGGAGATCCGCGCAATTACATGCTGACATTGCGCGGCGAGTTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCTGCCGAAGGCAGCAGCTACAAGAGTTTGAGGCTTGCAGCTTGCGGCTTAAAGCTTGCTGCTCATTTCCCCCTCAGCCTTTCTACAACCCCGTCCAGA AACCCCTCCCCGATCACGATATTGTCGTGCCGCTCCTGAATGACGATCGAAGAACCCAGCCCGTTTACCGAGCATTGTTCTTCAACCACGGCTTGCGCCT TGAGGATCTGGTCCGGTTCGCGGCTTTGTCCTGCCCACCAGCAATCCACTTTTACGTCCAGTGTCTTGAGGGTGAAGGCTTCGGCCAGTACGGCATTGGC GTGCAGCAGTTTGTAGCCGGTTTCGATTTCATCCTGGATCGCGATGTCCTGGAACACGCTACGCAGGCTTTCGACGCCGATACCGGCATCCTGTGCAACC TGTTCGATCACCCGGTCAGCGATTTCACGTTCATCCTTGAGCGATACCCTGGCGCTTGCGATCAACTCGATCACACGCTCACGGGCCAGCCCCGGCACGA
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| Amino Acid Sequence |
>ligand-gated channel
MLLQPRPAIRVIGFALLMTFKAEALAQEIEFDIPAQPLNSALNELGRQGDLQVLYNPDDIKGKSSQAVRGRFTLEQAARNLLDQARVPYSLENNTLTLTA IIPPVSLKPLSIQAPPAGLITEGSGSYTTSAVSITKSAQSLREIPQSVSVVTRQLMNDKNLYSLEDVMAQATGVTFSQRNFGSHVFSSRGFAMEDESYTI DGISGQGYSVTGWMTPDMEIYDRVEILRGAAGLLIGAGNPGGTVNLVRKRPTAIPQFSITTRTGTWNNNRVDLDGSSKLNDSGSIRGRFVASYADRDYFI DGLSKSAPLLYGILEADLNDDTTLAVGVRRQEADIKGFTIFGLPRYSDGSALDVPRSTSLAQDWNRHQTRTDEVFTELDHHFSENWSGTLSATHSTGSFE QKVAYAQGAIDPATLTGSRIARTLFRSDQLHSNGFDAHMDGHFEAFGLEHQLTFGGNWSEQMRKSSQVNVTSNQPIDVFDPDSHLIAEPAQPDWTSITDF SDKRYGAYANLRLHLSESLSLVMGGRLSWYDYQTQAASVTRKSIEQHELTPFIGTIYDLNPDWSLYASYTDIFLPQSVYRDAAGNLLKPAIGANYETGIK GELFEQRLNLSFAMFYVKQKDVAVEDNANPGECLMNDIYGTCYLNGNIRRSKGFEVEASGEPLPGLQTVAGYTFNMTRGSDGQSISAETPRHLFRMTGNY TLPGTWNRLTLGAGVSAQSGYSEAESSAEIKNPGRAIWDARASWKIDEHWSVALNGNNLLDRKYYKATGDVDRGNYYGDPRNYMLTLRGEF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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