Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GGCCGTTCCAGATTTCCGGCCAGCCGAACACCGTCAGTGCCGCACCCGACAAGCGTCCGCGAGCGGTCTTCACCAGATCGAATTGCCCGGAGCCGTCCTT GTCCGCTTCGTTGCGTTCGCTGCCGAACTTCAGGGGCACAGTGATGTGGCTGTCGAAGGAAATGATCCGTTCCTGCAGCTCTTCGGCCTGTTTCATCACC TTGACCGGGTAACCCGATGGCGACCAGTAATTCCAGGCCAGCCAGCCTGCACCGGCACTGATTGCCAGAGCCAGGGGCAGGCCAATGAAAAGAGCCTTTT TCCAACGCGGTTTTGTCATTGCCATCTCTATTCCGGTTCGCCGTTCAGAAGCAGGCACAAGGGCCTTTGCTATCTGGGGAGAACGAGCGGATGGCGGAAA AATTTAACGCGGATGCCGTTCGCGGTCCTTGCCCTAAATTTCTGCATCGATGTTACGTCCTAGCTGGGATAAACGCCGTTTTGGGGCAACAGGTAGTGCA
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DNA Sequence for Gene |
>BH81_RS15470
ATGACGATTTCTCGACGAGGGTTTATAGCGGGCCTGGCGCTCACCGGTGCTGCGGTACCGGCTGCTTATTACGCACACCGCGAACTCACGCGCGTCGAAG AGCCCGTTACACCGGGGGAAGCGACTGCCGCTGCGGCCGATACCGCTACCCAGCGGCTGGCCGACAAGCTGCGCGGGATATGGGATATACGTTTCGAGGG GCGTGATGCAGGATTGGCCGGAGCGCCGCTCAAGGGCCTGGAAATGTTCCTGGACATTGCCCCGCGTGGCCGTGGCCTGCGGGGTTATATCGACACCGCT GAGCGTCTGCGTGGCGATGCTGAACCGCGCTTTCGGGTGATCGGCGACCTGCGTTCTGCCGATGCCTCGACGCTGTATTTTCGGGTCATTGACGGCCATC TCGATGACAGCCCGCAAAGCGATGCGCCGGACTATGAATTCAGCATGGTTCTGGATGAAGTCTGGGGCAGCTTCGGTAATGCGGGCAGCGGCACTTTGAG TGGGCGCATCGAGCGTCTGGATCGTCCGCTGGCGTTGCCTGAGCTGGAAAATCGTTTTATTGCCACCAAGCAGGTGTTTCCCGAAGCCCGTGACCGTATC GGGCTGACGCCTCCGTTTCTGGCCTGGCTGGTTTCAAAGGAGCATCGCCTGTTTCACCAGCTCTGGCATGCCAGCCGCGATAAGTGGCATCGCCTGCCCG AAGAAAAACGCAATGCCCTGCGCGGTATCGGCTGGCAGCCAGGCCCGAGAGACAAGGAGCGCGATGCCCGTGGCGAGCGCAAGGACCGTAATGGCTCGGG CATCGACTTTTTCTATATGCATCGGCACATGCTGATCCAGGCCCGGCAGTTTCAGGAGCTGCCTTCCTGGCCGCGCTTCCCTTTGCCGCAGCCGGAGCTT GAGCGGGACCGTCAGGGCTTTGCCCGATACTTCGATAATCACGATGGCTGCGCGTTGCCACCGCCCTGGCAGGCCAATGGTGATGCGGAATATAGCCAGT TGGTCAGCGATATCAAAAGCGACGAGACATTCAGCACGCATTTTCAGGCGTGGGAATCCCAATACAGGGACCCGCGCTTTCTGTCGAAACTGACCCTTGG CCAGTTTGGTTCCCAGGTTGAACTGGAACTGCATGACTGGTTGCACATGCGCTGGGCGTCCGTTGCGAGGGACCCTTCAAATGGCGAGCCGGTGCCCATG GCCCGTGATTCGGCGGATTTCGCGGCGCGCTGGTTCGAGCCGGAAAACGATTTTCTCGCTGACCCGTTTTCTTCCCATGTGCATCCGGTTTTCTGGATGT TCCATGGCTGGATCGATGACCGGATCGACGACTGGTTCCGTGCCCATGAGCGCTTTCATCCGGGAGAAGTGAGCCGTCTTGAGGTCAATGGCGTGCCATG GTTCGCGCCGGGGCGCTGGGTTGAAATCAGCGATCCCTGGCTCGGCCCGCAGACTCATGGATGCAGCACCGCACCGGGCCTGAATGCCGGGACCACCATG GAAATGGACCCGGAGGTCATGAAGCTGGCGCTGCGCATTACTTTTGCTGCCGATGACAAGCTCGGCAACCTCCTGCGCCGCGTGCCGCGTCGGCCCTGGT ATGCAAGAAATCTGCTGCCGGACAAGTGGTTTGGCGGGGGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCCGGTTTGAGTGTGACGCCGGTTTTCATGGGGGAGTGAGCTTGCTCGCGACGGTGCCGGAAATACACCGTCGTTCACACTGCCGTCGCGGCCAAGGCAT TCCTACAGCGGGTGTGACCAGCCGCCACCCAGGGCCTTGTACAGCGCAATACTCGCCTGCACCCTCGACAGCCGAAGCTGCACGCTCACATCCTGGGCCA GATACAGTGTGCGTTGGGTTTCCAGCACGGTCAGCAAATCCTCCGCGCCGGCCTCGTAACGGCTCTGGGCGATGCGGAATGCGGTCTGGGCCTGTTTGAG TTCTTCGTCGTGCCAGTGCCTTTGCTGGTCGAGGCCGCTGATGCTGTTCAGGGCTTTCTCCACGTCGGCGAAGCTGTTGATGATCGCGCCGCGATAGGTT TCCAGCAGTTCTTCCTGACGGGCCGTGGCCTTGTCGCGCTCTGCACTCAAGCGTCCGTTATTGAAAATCGGTCCGGTCAGGCCGGCAGCCAGACTGCTGA
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Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRGFIAGLALTGAAVPAAYYAHRELTRVEEPVTPGEATAAAADTATQRLADKLRGIWDIRFEGRDAGLAGAPLKGLEMFLDIAPRGRGLRGYIDTA ERLRGDAEPRFRVIGDLRSADASTLYFRVIDGHLDDSPQSDAPDYEFSMVLDEVWGSFGNAGSGTLSGRIERLDRPLALPELENRFIATKQVFPEARDRI GLTPPFLAWLVSKEHRLFHQLWHASRDKWHRLPEEKRNALRGIGWQPGPRDKERDARGERKDRNGSGIDFFYMHRHMLIQARQFQELPSWPRFPLPQPEL ERDRQGFARYFDNHDGCALPPPWQANGDAEYSQLVSDIKSDETFSTHFQAWESQYRDPRFLSKLTLGQFGSQVELELHDWLHMRWASVARDPSNGEPVPM ARDSADFAARWFEPENDFLADPFSSHVHPVFWMFHGWIDDRIDDWFRAHERFHPGEVSRLEVNGVPWFAPGRWVEISDPWLGPQTHGCSTAPGLNAGTTM EMDPEVMKLALRITFAADDKLGNLLRRVPRRPWYARNLLPDKWFGGG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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