Pseudomonas cichorii JBC1, BH81_RS12185
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCATATCATCGCCAACGGTGCCGAACTGTGCATTCGACAGGACGAGCACCGTTGTCGGGTTTCGGTGGCGAGTGGCAGTGTCGATCTGCTGTCCAGACA AGGCGCGACCTTGCGTCTCAAGGGGGGCGAACGGGCAGCCCTGACTGCTCAAGGTGTTACTGCGGTCGAACGCTTCGACGCTCGCCAACCGGATTGGCGC CAGGGCGTGTTGACCGTAGAGAATCGCCCGCTGGGGAGTTTCCTGACCGAACTCAATCGCTATCGTCCCGGGATTCTGCGCTGGGAACCCGAGCTGGAGG CCTTGAGGGTGACCGGCTCGTTCCGGCTGGACGATACTGATCGCATTCTGGATTTGCTGGTTGCAAGCCTGCCTGTACAGGTGCATTCGCGGACACGGTA CTGGATCACCCTGGGGCCTCGAAATATTTCTGCCTGACGTGTCCCTTTTTTTTCCGTCGCTTGTCATCTCTCTCAAGTGAACACAAAAGAGAGTGCTCCA
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| DNA Sequence for Gene |
>BH81_RS12185
ATGCCCGTAGTTTTCTTGCGTCGCCTGCGTCTTGCCCGTTTCGGCATGGCTCCGTTGCTGCATATGAGTTGCCAGGCCAGCGTGGTGATCGGTCTTGGCG TCGCGCCGGTATTCGTGGCTTCGGTCCAGGCGGAGGAGTCTGTGCGGCGCAGTTATCAGATTCCGGCTGGCAGCCTGAGTGCCGCCTTGACCCGCTTTGC TGCGCTGTCTGGCGTCAGCCTTTCCGTAGACCCGGCACTGGTGGCCGGTCGCAACAGCAAGGGGCTTGATGGCGAATACCCTGTCGATGAGGGCTTCATG CTTTTGCTGCAAGGCTCCGGACTGCAATTGCAACCGCTCGGCAATCAGTCCTATACGCTGGTGCCTGCACCGGTCGCAGAAAACGGCTCGATGGTATTGC CCAATACGTCCATCGACGGCAGCCGGCTGGACGGGCCGGGCGACATTTATGCCGGTGGCCAGGTCGCCCGCAGCGGTTCCCAGGGCATGCTGGGCGATCG TGATTTCATGGAGACGCCCTTCAACCAGACGTCCTATACCAGCACCACGATCAAAAACCAGCAGGCGCGTACTCTTGGCGATATGGTTGCCAGCGACCCG TCGGTGCGTACCACCAACCCGGCAGGCGGGCGTTTCGAGCAGTTCTCGATTCGAGGGTTCAGTCTGTTCAACAGCGATGTGTCGTTTGGTGGGTTGTATG GCGTGCTGCCGACGTACTCCATCGACATGGAGATGGTCGAGCGGGTCGATATCCTCAAAGGGCCCGGCGCGTTATTGGGTGGCATCGTTCCGCGCGGCAG TGTGGGCGGCAATATCAATATCGAGCCCAAGCGCGCCGGCAGCGAACCGTTGACCGAATTCACCGGCAGCTTTGCATCGGCCGGGCAGTTTGGCGGGCAC GTGGATATCGGTCGCCGCTTTGGCGATAACCAGCGTTTCGGGGTGCGTTACAACGGGGTACGGCAATCGGGCGATACCGAGTGGGATCACCAGAAAGTCG AGCGTGAAGCTTCGGTCATCGGGCTGGACTGGCGTGAAGACCGGATGCGCATGTCGCTGGATCTCGGGGAGCAGGAGCGTTATGCCGATGCGCCCATCGA GCGGGTCGAAGTCGCCGCCGGTATCGCCATGCCCAAGGCCAGGGATATTCGTCGCAACATTGCCCAGCCCTGGACTTATTCCCACTCCAAGGACTCTTTC GGCGCATGGCGAGGTGAGTTCGATCTGAGTGATGCAGTGATGGTGTATGCCGCTGCCGGTGCGCGCAAGGGCAATTATGACTTCCTGCGCCACACGGTTC CTGTGACCACCAGCAGTGGCGATTTTACCGTGACGCCGCGTACTTTTCGGCGCGACGAGGAGGTCAAGACCTTCACGGTCGGTGCGCGTAGCTGGTTCAA CACCGGGCCGGTGGGGCATACGCTGAACATCAGCCTCAACCGTTTCGACTTCGAGTTCGATAACGCCGGCGAACGTTACCAGCCTCGCACCAGCAACCTT TATAACCCGGTCGTGTTGCCGTATCCGGGTGCGCCAACCCGCTTCGATACCTCGACTCATACCGAAAACCTGTTCACCAGTATTGCGCTGGCCGATACCT TGAGCTTTCTTGACGATCGCGTGCTGTTGACCCTGGGCGCTCGCCTGCAGCGGGTTGAAGTGGACAGCTATTCCAATGGTGCGCTGGGGCAGCGCTACGA CGAGCGCGCCACGTCTCCCGCCATGGGGCTGGTGATCAAGGCCACCGACTCGATCTCGCTATATGCCAACTACATGGAAGGCCTTAGCCAGGGCGAGACT GCGCCCACGACTGCCACTAACAGCGACGAAGTGTTTGCACCCTACAAGTCCAAGCAGACGGAAGTCGGCGTGAAGTATGACCATGGCACTTTTGGCACCA GCCTGAGTGTATTCCGCATAGAACAGCCGGCCTACATCACCGATGCCCAAGGCAACTTCAAGCCCGATGGCGAACTGCGCAATCAGGGTGTCGAGTTGAA TATGTTCGGTGAACCCTTATCGGGTGTACGGCTGCTGGGTGGCGTCATGTTACTTGACAGTGAGCAGACCAAAACCGCGCTGGGCACTTTCGATGGCAAT CGCGGCACCGGCTCGCCTGAGGTCAACGCCAATATGGGTGTGGAGTGGGATATCAATCGCCTGCCAGGCCTGACGCTTACTGCCCGTGCCATTCATACAG GGTCGCAATACCTGGATGCTGCCAATAACCAGAAAATCGACTCATGGGAACGTTATGACGTCGGTGGCCGTTATGCCTTCAAGCTGGGCGATAATCCCGT CACCGTGCGCGCTTCTGTAGAAAACGTGCTGGATAAAACCTATTGGGCATCGGCAGCAACTTCGTCAGACAGTGCGGCGGGCCTTACATTGTCGACACCG AGGACTTATCTGGTGTCGGCGACTGTCGGGTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTGTTGCAGCGGCATTCCGTGTACGACCGAATGCCGCTCCGGCCTTCCTGGAGAAGGCCGGGAGATCAATTCAGTTTCGAACTCACGTAGATCAAGCG TACTGCCGCAACTGTAATGGCTTCCGCTTCTTCCTTGATAGTGCCCACTTGTGACCTGATCGAGGTATTTTCATGGTTCTCGAGTAATCGGGCCATGTGG TAGATGTTCTGCGTGACTTCATGCAGGTTTTTATGCAGGCGCGATATGACGCGATTCAGGCGCTCGCTCGTGTCATGAATCTCCAGAGTGGGGAGAGGGC GCTCAAGGCTGAAACCTGTCACTACATAGGTTACATCGATGCCTGCGTCTGAAATACGGGCCAGGTAGTCGGCTCTGGGTGAACGTATGCCGTTCTCGTA ATTGCTCTGGGCATTGGTTTCAACACCCCCAATAGCGCCCAGCGTGCTTTGTGACAGTTTGAGTCTTATTCGTTCTCGTTTGAGGCGGGGGCCGATTCCG
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| Amino Acid Sequence |
>TonB-dependent receptor
MPVVFLRRLRLARFGMAPLLHMSCQASVVIGLGVAPVFVASVQAEESVRRSYQIPAGSLSAALTRFAALSGVSLSVDPALVAGRNSKGLDGEYPVDEGFM LLLQGSGLQLQPLGNQSYTLVPAPVAENGSMVLPNTSIDGSRLDGPGDIYAGGQVARSGSQGMLGDRDFMETPFNQTSYTSTTIKNQQARTLGDMVASDP SVRTTNPAGGRFEQFSIRGFSLFNSDVSFGGLYGVLPTYSIDMEMVERVDILKGPGALLGGIVPRGSVGGNINIEPKRAGSEPLTEFTGSFASAGQFGGH VDIGRRFGDNQRFGVRYNGVRQSGDTEWDHQKVEREASVIGLDWREDRMRMSLDLGEQERYADAPIERVEVAAGIAMPKARDIRRNIAQPWTYSHSKDSF GAWRGEFDLSDAVMVYAAAGARKGNYDFLRHTVPVTTSSGDFTVTPRTFRRDEEVKTFTVGARSWFNTGPVGHTLNISLNRFDFEFDNAGERYQPRTSNL YNPVVLPYPGAPTRFDTSTHTENLFTSIALADTLSFLDDRVLLTLGARLQRVEVDSYSNGALGQRYDERATSPAMGLVIKATDSISLYANYMEGLSQGET APTTATNSDEVFAPYKSKQTEVGVKYDHGTFGTSLSVFRIEQPAYITDAQGNFKPDGELRNQGVELNMFGEPLSGVRLLGGVMLLDSEQTKTALGTFDGN RGTGSPEVNANMGVEWDINRLPGLTLTARAIHTGSQYLDAANNQKIDSWERYDVGGRYAFKLGDNPVTVRASVENVLDKTYWASAATSSDSAAGLTLSTP RTYLVSATVGF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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