Pseudomonas cichorii JBC1, BH81_RS06480 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCAGAATGAAGGCCATGTACTTGAAGGACACCACCCAGATCAACGACCAGAAAATCAGCGACAGGATGCCCAGTATCGCGTCATGGGTGACATCAACCC CATATCCCCCCTGAAAGACCTCCTTGAGCGTATACAGCGGGCTCGTACCGATATCCCCATACACCACGCCCACAGCCGCAATCAGCAGCCCCAAGGGTTT TGCAGTGCTTCCAGTCTCAGCATGACTGCTTGCCTGACTCATCCAATACTCCTGAAACAAGACTTGAGGCCCAAAGCACTATGAACTTCACACCACGTAA CAATTCCGATCGCGCCAATTATTGACATGCGTTGGCGCAATGCCGCGAAGCATAGCGCAGCACTCGTCGTAATTCTCTGTTTAACACTGGTCATCGCACG CACTCATCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCACCAAGCGCCCAATCGGTGCCCGCGTATTGAGCCAGGCACCCTTCACGCCGAGGTTTGCC
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| DNA Sequence for Gene |
>BH81_RS06480
|rimO
ATGTCCACCGTCACCACGCCGTCCGCCCCCAAGGTAGGCTTCGTTTCCCTGGGTTGCCCGAAAGCTCTGGTCGACTCCGAGCGCATCCTGACCCAACTGC GCATGGAAGGTTACGAAGTCGTTCCGACCTATGAAGATGCTGACGTGGTTGTGGTCAACACCTGCGGCTTCATCGATACCGCCAAGGCGGAATCCCTGGA AGTGATTGGCGAGGCCATTGCCGAAAACGGCAAGGTGATCGTGACCGGTTGCATGGGCGTGGACGAAAGCGTCATTCGCAACGTGCACCCGAGCGTGCTG TCGGTCACCGGCCCTCAGCAATACGAGCAGGTGGTCAATGCCGTGCATCAGGTCGTGCCACCGAAGCTGGACCACAACCCGCTGATCGATCTGGTACCGC CACAAGGCATCAAGCTGACGCCACGTCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGTTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAACTGGTCAGCCGTCCGGTAGGCGATGTGCTCGATGAAGCCCAGCGTCTGGTCAAATCCGGCGTGAAAGAGCTGCTGGTGATTTCCCAGGACACCAGC GCCTACGGCGTCGACATCAAATACCGCACCGGTTTCTGGAACGGCCAGCCGGTCAAGACCCGCATGACCGAACTGTGCCAGGCTCTCAGCTCCCTGGGCG TCTGGGTTCGTCTGCACTACGTTTATCCGTACCCGCACGTCGATGAGCTGATCCCGCTGATGGCCGCCGGGAAAATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAGTGCTCAAGAACATGAAGCGCCCGGCCTTTGAAGACAAGACCCTGGCGCGCATCAAGAACTGGCGCGAACAGTGCCCGGAC CTGATCATCCGCTCCACCTTCATCGTCGGCTTCCCCGGCGAAACCGAAGAAGACTTCCAGTACCTGCTGGACTGGTTGACCGAAGCACAACTCGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTTGAAGGCGCGCCTGCCAATCTGCTGGACGCAGAAATCGTACCGGACGACGTGAAGCAGGATCGCTGGGATCGCTT CATGGCGCATCAACAGGCAATCAGCGCTGCCCGTCTGCAGATGAAGATCGGCAAGGACATCGAAGTCCTGATCGATGAAGTGGACGAGCGCGGTGCAGTA GGCCGCTGCTTCTTCGATGCGCCGGAAATCGACGGCAACGTCTATATCGGTCTTGAAGACGACAGTCCGGTCAAACCCGGTGACAAGATCATGTGCCGCG TGACAGACGCCGACGAATACGATCTGTGGGCCGAAATCATCGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGTTGAAACCGAATCAGCCCCGCCCTTGAAAACGGCGGGGCTTTTTTATCGGTCCGGGTTGTCTACTCATGCAGCCCACCACAAGAGCCCATCGAAATGG ACCTGTACACGCCCGAGCAAAACGACTTTCAGGAACTGGCCAACCTCTGGGAACGCTCGGTACGTGCGACCCACGACTTCCTGCCCGATAGCTACATCGC CATGCTCAAAGAGCTGCTGCTCACGCAGTACCTGGGTTCGGTCACCCTGTTCTGCACCCGCGACGCACACTTGAAGATCACAGGCTTTGCAGGCATCAGC CTGTACAAGCTGGAAATGCTGTTTGTCGATCCCGAACATCGCGGTCAGGGCCTGGGCAAGCACCTGCTTGACCATGCCATCGAGTATTTCAACATCAACG AGCTGGACGTCAACGAACAAAACCCGCAAGCCCTGGGGTTTTATCGCAGGCAAGGTTTCGAGGTGATCCACCGCAGCGAACTGGACGGGCTTGGGCAACC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTVTTPSAPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDTAKAESLEVIGEAIAENGKVIVTGCMGVDESVIRNVHPSVL SVTGPQQYEQVVNAVHQVVPPKLDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDIKYRTGFWNGQPVKTRMTELCQALSSLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKNMKRPAFEDKTLARIKNWREQCPD LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAEIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKDIEVLIDEVDERGAV GRCFFDAPEIDGNVYIGLEDDSPVKPGDKIMCRVTDADEYDLWAEIID
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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