Pseudomonas cichorii JBC1, BH81_RS03445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGATGCTTCAGGGCGATCTGGCCAAGGTAGGCATCAAGCTGGACATTCGCGTCATGGAATGGGGTGAAATGCTTAAACGCGCCAAAAATGGCGAACAT GACATGGTTTTTGCGGGCTGGGCAGGCGACAACGGCGACCCGGATAACTTTCTGACGCCGAACCTCGGCTGCGAAGCCGCAAAAAATGGCGAAAACTATG CTCGCTGGTGCAACAAGGAGTTTGAAGACGCGATCACCCAGGCCAGGGAAAAAACCGCCCCTGCCGAACGTGCCGCGCTCTACAAAAAGGCCCAGCAAGT GTTCAACCAGGAGCAACCATGGATAAGCCTGGCCTATCCAAAACTGTTCGTAGCAATGCGCAAGAATGTCGAAGGCTTTCATATCAGCCCGCTGACCAAT AACAACTTCACCACTGCACAGGTGAAGTAAGAAAAACAGCCGCCCGCGTCCACAAGATCAAGGGCGGCATGCCTGAAAGGCTGATGAGGTACACCACAAG
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| DNA Sequence for Gene |
>BH81_RS03445
ATGTTTAGTTTTATTGCCCGCCGGGTGGGGTTACTGATCCCTACCTTCTTCGGCATCACCCTGCTGACCTTCGCTCTGATTCGCCTGATTCCGGGCGACC CGGTCGAAGTCATGATGGGCGAGCGCCGGGTCGACCCGGAAATGCACGCCCAGGCCATGGAACGCCTTGGTCTGAACAAACCGCTTTATGCGCAGTACAT CGATTATGTCGGCAAGCTCGCCCAGGGCGACCTCGGCGAATCCCTGCGTACCCGCGAAAGCGTCTGGACCGAGTTCACATCGCTGTTTCCCGCGACCCTT GAACTGTCGATCGCAGCCTTGATCTTCGCCGGCATTGTCGGCCTTCTGGCCGGGGTGATTGCCGCACTCAAGCGCGGCTCGCTGTTCGACCACGGGGTCA TGGGGATTTCCCTGGCGGGCTACTCGATGCCGATCTTCTGGTGGGGCCTGATCCTCATCATGTTCTTCTCGGTATCCCTGGGCTGGACCCCGGTATCGGG ACGCATCGACCTGCTGTATGACATTCAGCCGGTAACCGGTTTCATGCTGATCGACACCCTGCTCAGCGATGAAGAAGGCGCCTTCCTCGATGCCCTGCAT CACCTGATTCTTCCGGCCATCGTACTGGGCACCATCCCGCTGGCGGTCATAGCCCGGATGACTCGTTCCTCGATGCTCGAAGTGCTGCGCGAAGATTACG TGCGTACCGCACGGGCCAAAGGCCTGTCGCCCGCCCGCGTGGTGTTCGTCCACGGTCTGCGCAATGCGCTGATACCGGTCCTGACCGTTTTCGGCCTGCA AGTCGGCGCGCTGCTGGCAGGTGCCGTACTGACTGAAACCATCTTTTCCTGGCCCGGCATCGGCAAATGGCTGATCGAAGCCATCGGCGCACGGGATTAT CCGGTCGTGCAGAACGGCATCCTGTTGATCGCCTGTCTGGTGATCCTGGTCAACTTCGTGGTGGATATCCTCTACGGCTTTGCCAACCCACGCATCCGTC ACCAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCCTGACCAATGAGCACACCTACTCCTGAGGTAGCAGTCGATCAAAGCCTGCTCTACCCATCGCCTTACAAAGAATTCTGGCACGCCTTTTCCCGGAA CAAAGGTGCCGTTGCCGGCCTGATGTTCATGATCCTGATCGTGTTCTGCGCACTGTTCGCCCCCTGGGTTGCGCCCCACGATCCGAGCGAGCAATACCGA GACTTCCTGCTGACCCCGCCGGTCTGGCTGGAAGGCGGTCAATGGCAGTTCATTCTCGGCACCGACGAACTGGGTCGTGACCTGCTGTCGCGTCTGATCC AGGGCTCACAGCTGTCGCTTCTGATCGGCCTGTCGTCCGTGGTCATGTCACTGATCCCCGGTATCCTGCTGGGCCTGCTGGCCGGTTTCTTCCCGCGCTT CCTCGGCCCTACGGTCATGCGCCTGATGGACATCATGCTGGCTCTGCCGTCGCTGCTGCTGGCTGTTGCCATCGTCGCGATCCTCGGCCCTGGCCTGATC
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| Amino Acid Sequence |
>peptide ABC transporter permease
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYIDYVGKLAQGDLGESLRTRESVWTEFTSLFPATL ELSIAALIFAGIVGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIQPVTGFMLIDTLLSDEEGAFLDALH HLILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAKGLSPARVVFVHGLRNALIPVLTVFGLQVGALLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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