Pseudomonas cichorii JBC1, BH81_RS02870
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCCTGTTCATCTATACCGTGCTGTTCATCGTGGTGCTGGCCGTGCTGTTCATCAAGCATCGCCTGACTCGCATGCCCATCGGCCGTGCCTGGGAAGCGC TACGCGAAGACGAGATTGCCTGTCGTTCGATGGGGCTCAATCATGTGCTCGTCAAGCTGTCGGCGTTCACCATCGGGGCTTCGACGGCCGGTCTGGCCGG TGTGTTTTTCGCCAGCTATCAGGGCTTCGTCAACCCGACTTCCTTCACCTTCTTCGAGTCGGCACTGATCCTGGCGATTGTGGTGCTGGGTGGCATGGGC TCGACGGTGGGGGTAGTGATTGCGGCTTTCGTGCTGACGGTCGCGCCCGAACTGCTGCGCAGTTTCTCCGAGTACCGGGTACTGCTGTTCGGAATCCTGA TGGTATTGATGATGATCTGGCGGCCTCGGGGCCTGATCCGCATCAGCCGTACTGGTGTGATGCCGCGCAAGGGCATGCTGACCAAAGAAGGAGCGGCGTC
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| DNA Sequence for Gene |
>BH81_RS02870
ATGAGCAATGAAGTCATTCTCTCGGTCGAGCATCTGATGATGCATTTTGGCGGCATCAAGGCGTTGAGCGATGTCAGCCTGCAAGTTCGTCGCAACTCGA TCTTTGCCCTGATCGGCCCAAACGGCGCGGGCAAGACCACGGTCTTCAACTGCCTGACCGGTTTCTACAAAGCCACGGGCGGACGTATCGAGCTGCATAC CCGTGGCAAGACCACCAATGTGATCAAGCTGCTGGGCGAGTCGTTTGCTGCGACAGACTTCGTCTCACCCAAGAGCTTCTTCAGCCGCCTGTACTACAAG ATGTTCGGCGGTACCCATTTGGTCAACCGGGCCGGGCTGGCGCGCACGTTCCAGAACATTCGACTGTTCAAGGAAATGTCGGTAGTGGAAAACCTGTTGG TGGCCCAGCACATGTGGGTCAATCGCAGCCTGCTCAGCGGCATTCTCAATACCAAGGGTTATCGCAAGGCTGAGGAGGATGCACTCAATACGGCGTTCTA CTGGCTGGAAGTGGTGGATCTGGTGGGCTGCGCCAACCGCCTCGCCGGTGAGTTGTCCTACGGTCAGCAGCGCCGCCTGGAAATTGCCCGGGCCATGTGC ACACGGCCCCAGGTGATCTGCCTCGACGAGCCTGCCGCCGGCCTCAACCCTCAGGAAACCGAAGCCCTGAGCGGCATGATCCGCCTGCTGAGGGACGAAC ATGACATGACCATCGTGCTGATCGAGCACGACATGGGTATGGTCATGAATATTTCCGACGATATTGTGGTGCTGGACCACGGCAACGTGATTGCCGCTGG CAGACCGGAGCAGATCCGCAACGATCCTAAAGTGATCGCCGCTTATCTGGGCGCTGATGAAGAGGAATTGGTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGCCGATCCTCGAAATGAAAGAGATCGATGTGTATTACGGGCCGATCCAGGCTCTCAAGAAGGTTTCGCTGCATATCGATGAAGGCGAAACCGTGAG CCTGATCGGCTCCAACGGCGCGGGCAAGTCCACGCTGCTGATGTCGATCTTCGGCCAGCCGCGTGCTGCCAGCGGGCAGATCCTCTATCAGGGCATCGAT ATCACGCAGAAGTCGTCGCACTACATCGCTTCCAACGGCATTGCGCAGTCGCCGGAAGGGCGCAGGGTATTCCCTGACATGTCGGTCGAGGAAAACCTGT TGATGGGCACCATACCGATTGGCGACAAGCATTCGGCCGAAGACATGCAGCGCATGTTCGATCTGTTCCCCAGGCTCAAGGAGCGCCGTAACCAGCGCGC CATGACCATGTCCGGTGGCGAGCAGCAGATGCTGGCCATCGCCCGAGCCCTGATGAGCCGCCCGAAACTGTTGCTGCTCGACGAGCCGAGCCTCGGCCTG
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| Amino Acid Sequence |
>ABC transporter
MSNEVILSVEHLMMHFGGIKALSDVSLQVRRNSIFALIGPNGAGKTTVFNCLTGFYKATGGRIELHTRGKTTNVIKLLGESFAATDFVSPKSFFSRLYYK MFGGTHLVNRAGLARTFQNIRLFKEMSVVENLLVAQHMWVNRSLLSGILNTKGYRKAEEDALNTAFYWLEVVDLVGCANRLAGELSYGQQRRLEIARAMC TRPQVICLDEPAAGLNPQETEALSGMIRLLRDEHDMTIVLIEHDMGMVMNISDDIVVLDHGNVIAAGRPEQIRNDPKVIAAYLGADEEELV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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