Pseudomonas cichorii JBC1, BH81_RS01470
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTTCGGCGGCAATAGCCTGGAAGGTACCTTCTTTGAGCCGACCATTCTGGTCAATGTGCCCAAGGATGCCGCTGTGGCGAAGGAAGAAACCTTCGGTCC GCTGGCGCCGCTGTTCCGCTTCAAGGACGAGGCTGAAGTGATCGCGCTGGCCAACGATACCGAGTTCGGTCTGGCTTCCTACTTCTATGCTCAGAACATG AGCCGCGTGTTCCGTGTGGCCGAAGCGCTGGAGTACGGCATGGTGGGTATTAACACCGGCCTGATCTCCAACGAACTGGCTCCGTTCGGTGGCATCAAGT CCTCGGGGCTGGGCCGCGAAGGCTCCAAGTACGGCATCGAAGACTATCTGGAAATCAAATACCTGTGCCTGAGCGTTTGACGCTGCGGGCTTGACCGGTA GCCGGGCGTTGCAGCAGTCGATCATCGTATGCTGCTGCAGCCCACCCCGGCTGCTTAATCCTTGAACTACGCCGACCGATGAGCGGCGAATGAGGAATAC
|
|
| DNA Sequence for Gene |
>BH81_RS01470
ATGAGCAATACAAACGAATCCTTGATGCAACGCCGCCAGAACGCTGTCCCACGTGGCGTTGGTCAGATCCACCCGATCTTTGCCGCATCGGCAAAGAACG CCACCGTTACCGACGTCGAAGGTCGTGAGTTCATCGACTTCGCGGGCGGTATCGCAGTACTGAACACCGGTCACCTGCACCCGAAAATCATCGCCGCCGT ACAAGAGCAACTGACCAAGCTGTCTCACACCTGCTTCCAGGTACTGGCTTACGAGCCGTATGTAGAGCTGTGCGAAAAAATCAACGCTCGGGTTCCAGGT GATTTCGCCAAGAAAACCCTGCTGGTGACCACCGGTTCCGAAGCTGTGGAAAACGCCGTCAAGATCGCTCGCGCAGCGACTGGCCGCGCAGGCGTGATTG CCTTCACCGGTGCCTATCACGGTCGTACCATGATGACCCTGGGGCTGACTGGTAAAGTCGTGCCTTACTCGGCCGGCATGGGCCTGATGCCGGGCGGTGT GTTCCGCGCCCTTTACCCGTGCGAGCTGCATGGTGTGAGCGTTGATGACTCCATTGCCAGCATCGAGCGCATCTTCAAGAACGACGCAGAGCCCAAGGAT ATTGCCGCTATCATCATCGAGCCTGTGCAGGGCGAAGGTGGTTTCTATGTGGCACCGAAGGCGTTCATGCTGCGTCTGCGTGAGCTGTGCGACAAGCACG GCATTCTGCTCATCGCTGATGAAGTGCAGACTGGCGCTGGCCGTACCGGCACTTTCTTCGCCATGGAGCAGATGGGCGTTGCTGCCGATCTGACCACCTT TGCCAAGTCCATCGCAGGCGGTTTCCCGCTGGCGGGCGTTTGCGGCAAGGCCGAGTACATGGATGCCATCGCTCCAGGCGGTCTGGGCGGTACTTATGCC GGCAGCCCGGTAGCCTGTGCCGCGGCCCTGGCTGTTCTGGAAGTGTTTGAAGAGGAAAACCTGCTGGCGCGCTGCAACACAGTGGGTGAGCACCTGGTTT CCGGTCTGAAAGCCATCCAGGCCAAATACCCGGTCATCGGCGAAGTTCGTGCCTTGGGCGCAATGATCGCTGTCGAGCTTTTTGAAGATGGTGACAGCCA CAAGCCAAACGCTGCTGCTGTCGCTCAGGTTGTGGCCAAGGCCCGTGACAAGGGTCTGATCCTGTTGTCGTGCGGTACTTATGGCAACGTCCTGCGCGTT CTGGTGCCTCTGACGGCCGAGGATGAGCTGCTGAACAAAGGTCTGGCTATTCTGGAAGAGTGTTTCGCAGAGCTGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAAAGTGCGGTTACAGATTGAGTGATTTGTGACCAGACAGACAGAAAAAACCCTGCCTCGGCAGGGTTTTTTCGTCTTGAGAACAGGATTTATCGCTTAC AGCTATATATCCGGACGAAGGCTTTGGCTAAGGTGAGCGAATCGATGTCGGAGAGTTCTGATGACTGCTGTAGATTTGACTGCGATGCCTCGCGTATTGA TTGCTGAATCGGATCCATGGGTTCGCGAAACCCTCAGTGATCTGGTGTTGAGCGTGCGGGCTGACGTCGAATTGGAGATGTGCAGCGACGGCAAGCAGGC CGTTGAATGGATCAAGAAACATCTGCCGGACCTGGTGGTAGCGGCCAGGGAGTTGCCGGTTATCGACGGTTTGAGTCTGCTGCGGGGCATCCGCGCCTTG CGTCGTCAGCCTCCCATTCCTTTTATTCTGCTCAGCAACCGTAGCGACAGCGCCAGCGTGCGCGAAGTCCTGCCGCTTGCGCCTACGGCTTACCTGACCA
|
|
| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSNTNESLMQRRQNAVPRGVGQIHPIFAASAKNATVTDVEGREFIDFAGGIAVLNTGHLHPKIIAAVQEQLTKLSHTCFQVLAYEPYVELCEKINARVPG DFAKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGVFRALYPCELHGVSVDDSIASIERIFKNDAEPKD IAAIIIEPVQGEGGFYVAPKAFMLRLRELCDKHGILLIADEVQTGAGRTGTFFAMEQMGVAADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPVACAAALAVLEVFEEENLLARCNTVGEHLVSGLKAIQAKYPVIGEVRALGAMIAVELFEDGDSHKPNAAAVAQVVAKARDKGLILLSCGTYGNVLRV LVPLTAEDELLNKGLAILEECFAELA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|