Pseudomonas cichorii JBC1, BH81_RS00885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCACATGCTCCTTGCGGATGATGTTCAGGCCCAGGTTGTGGAACGTCGACACCGTCAGGCCGCGACCTTCGCCACCGCGCAGCAGCGTGCCGACCCGC TCTTTCATTTCCCGGGCGGCCTTGTTGGTAAAGGTCATGGCAACGATGTATTGCGCACGGATGCCGCAGTTCTGGATCAGGTGGGCGATCTTGCGTGTGA TCACGCTGGTCTTGCCGGAGCCTGCACCGGCGAGCACCAAAAGAGGGCCGCCGACATAGTTCACGGCTTCCTGTTGCCGGGGATTGAGTCGGGACATGGC GGTATGGGTAGTCTGTTGCGAAAAAGGTCGGGCATTTTAACAGGCCCGCGCATTTATGCAGCGCTCATCGTTGAACGACAGGGACAGCTATCTAAATTTT TTGTTTTTGTTACATTTGACTCATCGCGAATGTGCGTCTACCAGTCACACCCTTTCGTTTGGGTGTTAATCGGTTTTTCCTTTGCAGTTAAGGAGTTAGC
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| DNA Sequence for Gene |
>BH81_RS00885
GTGCCTGTGCCTGTCGAGCCCCTGAGATTGCTGCTGTTGGCCCGAGAATCTGCATGGCTGGCGCTCTTGAGCAATTGTCTGGCATCGCTGGGCGATGAGG TCATTTTGTATCAGGCCGCTGACTGGGACGCCTTCCAGAAGCAGCCTGACAGTCCGCGTCCTTCCTTGCTGCTGACCACTCCCGAGCTGCAACCCCCTGC CACAAGTTGCCTGTTGCCGACGGTAATGCTGCTCGAAGAGGAACCGTTCGTCGCGCCGATGGGGGCCAGCGACTGGCTGGTCCGTGAAAGCCTGACGGCC GATACCCTTCGCCGCTGCCTGCGCCATGTTCGTGAGCGCGGAGCGCTGGAAGACACCCTGCAACGCCTGGCCGGCCAGGACCCGCTGACCGGTATCGCCA ACCGACAGGGTTTTCAGACGTTACTGACCGCCCGTCTGGCCGACAAAACCGGTTTTGCCCTGGGCCACCTGGACCTCGACAACTTCCGCCGCGCCAACGA TGCCCTGGGCCATCAGGCCGGTGACCGGTTGATCCTGCAGGTGGTGGCACGACTCAGGAACCAGCTGGACATCGGGGACCAGATCGCCCGTCTGGGCGGT GACGAGTTTGCTTTGCTGATCGACACCCGCCATACGCCCGAACGTGCGGTACAACTGGCCGGACGCATTACCGATGCGTTGTCCGAACCCTACTGGATCG ACGGTGAAAGCCTGCTGCTGGGCTGCAGCCTTGGCATCACTCATTCACAGTCCGAAACCGGCGCCGACGCCTTGATGTGGCACGCCCATATCGCCATGCG TCAGGCCAAGAGCCTTCAGGGCTGCACTTTCCGCCTCTTCGATCACCGCATCAACCGCAACGCTCGCAGTCTTGCGGACCTTGAGGCCGAACTGCGCAAG GCCTTGCGTACTGACGAACTTGAGCTGCATTACCAGCCGCGCCTGTGCCTGGAAAGTGGTGCGGTTGTGGGGCTGGAAGCATTGGTGCGCTGGCGCCACA GCGAGCGCGGGCTGTTACTGCCCAGCGAATTCGTGCCTCTGGCCGAGCAGAGCGGCATGATCGTGCCGTTGGGTTACTGGGTCATCCATCGGGCCTTGCG GGATATGCAGGCTTTGCGCGACCGGGGTTTTGCGCCGCTGCACATGGCGATCAACCTGTCGTTCCGGCAGTTTCAGGACAGCCAGCTTCTGCCGACCCTC AGCCGCCTGATCACCGAGCATAAAATCGATGCGCGCTGGCTGGAATTCGAGCTGACCGAAACGTCGGTCATGCGCAGCAGTGAGCAGGTGCGGCAGATCA TGGAAGCGCTGCGCCGATTGGGTGTGCGTTTTTCCCTGGACGACTTCGGCACCGGCTTTTCTTCCTTCATGCACCTTAACAGCCTGCCGATCGAACTGCT CAAGATCGACAAAAGCTTTGTCGGGGAAATGGAGCCGCGTGAGGAAAATCGCAAGCTTGTCCACGCAATGATCAACCTGGCCCATAACCTGAGCCTGGAA GTGGTGGCCGAAGGCGTGGAAACCCCTGAGCAACTGGCGCTGCTGCGCAGCTTTGGTTGCAATCAGGTGCAGGGTTACCTCATCAGCCGACCGTTGCCGA TGGCTGAGCTGGTTGACTATCTGGAGCGGCCGACAGGCGCGCACCCCTCTGCGAATAAGGTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCCCGCCCTATTCGCTTACATCAGGGATGAATGGCACCCAGATTGTCTTGCGGCTCCTGCCTGGACTTCACTTTTATCAACCGCGCGGTCTTCTTCTCG AAGGCATAGGTCAGCGCCACCGCCGAACATAGCAGGCCCAGCGCCAGTCCCCACCAGACACCCTCTGCGCCCAGATCGGTCGAAAAGGCCAGCAGCCATG CCGCAGGTGCTGCCACCAGCCAGTAGCAGACCAGCCCGATCAGAAAGGTGGTCTTGGCGTCCTTGAGGCCGCGAATGGCACCCATGGCGATGGTCTGCAT GCCGTCCAACAGCTCGAACCACGCCGCAATGGCCAGCAGCTTGACCGCCAGGATCACGATCTCGGTGAATGCCGGGTCATCGAGGTCAAGGAACAGGCCG ATGACCTGATGAGGCGCGAGCCAGAACAACAGGCCGAACATCAGCATCACGGCCCCGCCAAACGAAATGCCCAGCCGCCCGGCAGTGCGAGCCATCAATA
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| Amino Acid Sequence |
>diguanylate cyclase
MPVPVEPLRLLLLARESAWLALLSNCLASLGDEVILYQAADWDAFQKQPDSPRPSLLLTTPELQPPATSCLLPTVMLLEEEPFVAPMGASDWLVRESLTA DTLRRCLRHVRERGALEDTLQRLAGQDPLTGIANRQGFQTLLTARLADKTGFALGHLDLDNFRRANDALGHQAGDRLILQVVARLRNQLDIGDQIARLGG DEFALLIDTRHTPERAVQLAGRITDALSEPYWIDGESLLLGCSLGITHSQSETGADALMWHAHIAMRQAKSLQGCTFRLFDHRINRNARSLADLEAELRK ALRTDELELHYQPRLCLESGAVVGLEALVRWRHSERGLLLPSEFVPLAEQSGMIVPLGYWVIHRALRDMQALRDRGFAPLHMAINLSFRQFQDSQLLPTL SRLITEHKIDARWLEFELTETSVMRSSEQVRQIMEALRRLGVRFSLDDFGTGFSSFMHLNSLPIELLKIDKSFVGEMEPREENRKLVHAMINLAHNLSLE VVAEGVETPEQLALLRSFGCNQVQGYLISRPLPMAELVDYLERPTGAHPSANKV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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