Pseudomonas cichorii JBC1, BH81_RS00040 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTTGAACAAACTTTGAGCGAACTTGTTGAGCTTGAAGGTTTGACCCTGAGCTACTACCGAGGCTGGGATAAGGAAAAAGAGCTGAGCACTGTGCTC GCTTCATCCTTGCATCGTGATCAGCAAATGGGCCATACACAGGCCGGACCACAACGAGCTGATTTGCGTCTTAGATTGGGCGCACACAATGCTGCGGATA TATTGTCCCGCGGTCAGCAGAAATTAGTGGTCTGTGCATTGCGCATCGCTCAAGGGCATCTGGTTAGCCAGGCTCGCCGCGGCCAATGTATTTACCTGGT GGACGACTTGCCTTCCGAACTGGACGACAACCACCGCCGCGCACTTTGTCGCTTGCTGGAAGAATTACGCTGCCAGGTATTTATTACCTGTGTAGATCAA GAATTTTTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGATTGC
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| DNA Sequence for Gene |
>BH81_RS00040
|gyrB
ATGAGCGAAAATCAAACGTACGACTCGTCCAGCATTAAAGTGCTGAAAGGACTTGATGCCGTACGCAAGCGTCCCGGAATGTACATCGGTGATACAGACG ATGGCAGCGGTCTGCACCACATGGTATTCGAGGTGGTTGATAACTCGATTGACGAAGCTTTGGCTGGCCACTGCGACGACATCAGCATCACCATCCATCC AGACGAATCCATTACCGTACGCGACAACGGCCGCGGTATTCCGGTAGACGTCCACAAAGAAGAAGGCGTTTCGGCTGCAGAGGTCATCATGACCGTGCTC CACGCCGGCGGTAAGTTCGATGACAACTCCTACAAGGTTTCCGGCGGTCTGCACGGTGTAGGTGTTTCTGTGGTTAACGCCCTCTCGGAAGTCCTGCAAC TGACTGTTCGTCGCAGCGGCAAGATCTGGGAGCAAACCTACGTTCACGGTGTTCCACAGGAACCCATGAAAATCGTTGGTGAGAGCGATAGCACCGGTAC TCAGATCCACTTCAAACCCTCCGCTGACACCTTCAAGAACATCCACTTCAGCTGGGACATCCTGGCCAAGCGGATTCGTGAACTGTCATTCCTGAACTCC GGCGTTGGTATCTTCCTGAAGGACGAACGCAGCGGTAAGGAAGAGCTATTCAAGTACGAAGGTGGTCTGCGCGCTTTTGTTGAGTACCTCAACACCAACA AGACTGCGGTCAACCAGGTCTTCCACTTCAACGTCCAGCGTGACGATGGGGTGGGTGTCGAGATCGCCTTGCAGTGGAACGACAGCTTCAACGAGAACCT GTTGTGCTTCACCAACAACATTCCGCAGCGTGACGGCGGTACGCACCTTGTTGGTTTCCGTTCTGCGCTGACCCGTAACCTGAACAACTACATCGAACAG GAAGGTCTGGCCAAGAAGCACAAAGTTGCCACGACCGGTGACGATGCGCGTGAAGGTCTGACTGCGATCATTTCGGTCAAGGTGCCGGATCCGAAGTTCA GCTCCCAGACCAAAGACAAGCTGGTTTCGTCTGAAGTCAAAACCGCAGTCGAACAAGAGATGGGTAAATACTTCTCTGACTTCCTGCTGGAAAACCCGAA CGAAGCCAAGGCCGTCGTGGGCAAGATGCTCGATGCTGCACGCGCTCGTGAAGCTGCGCGCAAGGCACGTGAAATGACTCGCCGTAAAGGCGCGCTGGAT ATCGCGGGTCTGCCGGGCAAGCTCGCTGACTGCCAGGAAAAAGACCCTGCCCTTTCCGAACTCTACCTCGTGGAAGGGGACTCTGCTGGCGGTTCAGCCA AGCAGGGGCGTAATCGTAAAACCCAGGCAATCCTGCCGCTCAAGGGCAAGATCCTCAACGTCGAAAAAGCTCGTTTCGACAAGATGATCTCCTCCCAGGA AGTGGGCACTTTGATCACCGCCCTGGGCTGTGGCATCGGCCGCGAAGAGTACAACATCGACAAACTGCGTTATCACAACATCATCATCATGACCGATGCT GACGTCGACGGTTCGCACATCCGTACCCTGCTGCTGACGTTCTTCTTCCGTCAGTTGCCGGAGCTGGTCGAGCGTGGCTACATCTATATCGCTCAGCCAC CGCTGTACAAGGTCAAGAAAGGCAAGCAAGAGCAGTACATCAAAGACGACGAGGCCATGGAAGAATACATGACCCAGTCGGCTCTGGAAGACGCCAGCCT GCACCTGAACGACTCGGCTCCTGGTATCTCCGGCGAATCTCTGGAGCGCCTGGTCAACGACTTCCGCATGGTCATGAAGACCCTCAAGCGCCTGTCGCGT CTGTATCCTCAGGAACTGACCGAGCACTTCGTTTACCTGCCACCTGTCACGCTCGAACAACTGTCTGACCATGCCGGCATGCAAGCCTGGCTGGCCAAGT TCGATGAGCGTCTGCGTGCGGGTGAGAAGTCGGGTCTGGTGTACAAGGCCAGCCTGCGTGAAGACCGTGAACGTAACGTATGGCTGCCAGAGGTTGAACT GATCTCTCACGGCCTGTCGAACTACGTCACCTTCAACCGCGACTTCTTCGGCAGCAACGACTACAAGACCGTCACTGCCCTGGGCGCACAAATCAGCTCC CTGTTGGAAGAAGGCGCCTACGTGCAACGTGGCGAGCGCAAGAAGCCAGTCACCGAGTTCAAGGACGCCCTTGCCTGGCTGATGGCCGAAAGCACCAAGC GCCACACCATCCAGCGCTATAAAGGTCTGGGCGAAATGAACCCGGATCAGCTCTGGGAAACCACCATGGACCCAAGCGTGCGCCGCATGCTGAAAGTCAC GATCGAAGACGCAATCGCAGCCGACCAGATCTTCAACACCCTCATGGGTGATGCGGTTGAGCCTCGTCGCGACTTCATCGAGAGCAATGCGTTGGCGGTT TCCAACCTGGATTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTTGTTGTAGCTGCAAGTGGACGTGTTTTTATCGTCCTGTAAAAAACCCAGCCGAGTGCTGGGTTTTTTATGACCTACATTTGATTGTGCGCTTGCTCA TCGAGCATACCTGGCAGTGTGATCTTTATCTTACGGCCTCAAACTGTTCCAATGCCGCCATCATCACAATTAGCGAAATGGCAATTCCGATACCCATTGT CCAGTCGGATTCCGGGCGTGTGGAAAATCAGGTGTTTTTGGACGGGTACTTTCCAGGCGTGATAAGTTTTACCACAGGCCAGCCGATGGGTTAAAAAAGG CACGGAAAACGATCTCAAACAGTGCTTCCATCATGCCAGACGATCTTTGAGACTCTAAAAATTAGCGTTGTTATTACGCTATCGGTTTCCTGCAGAATAC CGCCAACTCCATATCCGTAGTGGCTGATTAAGCCCTGGTAAGTTGACGAATTAACCGTGACTATCTGCACAGCGTGAGCCGTTGCTGCTGCCGTATCCGT
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISITIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGESDSTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNS GVGIFLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLNDSAPGISGESLERLVNDFRMVMKTLKRLSR LYPQELTEHFVYLPPVTLEQLSDHAGMQAWLAKFDERLRAGEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISS LLEEGAYVQRGERKKPVTEFKDALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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