Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS27405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTCAAGGTCAGCACCCCTATCAGCGCCGAAGACACCGGCGGCAGTCTGCACGATCGCCTCGCGCTCATCGGCCCGCCGGCCGTGGTCCAGGCCATTGCCG GCCTGGCCGCCGGTACGTTGGCGGGCGAGGTGCAGGATGACAGCCTCGCCACCTACGCGCACAAACTGAACAAGGACGAGGCTCGCCTCGACTGGGCTCG TCCGGCGGTAGAACTGGAACGCCTGGTGCGCGCGTTCAACCCGTGGCCAATCTGCCACAGCACCCTGAACGGTGAAGCCCTGAAAGTGCTGGCGGCCAGC CTTTGCGCAGGGAAGGGCACTCCCGGTGAAATCCTCGGCGCCAGCAAGGACGGCCTCGTGGTGGCCTGCGGTGAGCAGGCGCTGTGCCTGACGCGCCTGC AATTGCCCGGCGGCAAGGCGCTGAACTTCAGTGATCTGTTCAACAGCCGCCGTGAGAAATTCGCCGTCGGCACCCTGCTGGGCCAAGCGGCGGACGCCTC
|
|
| DNA Sequence for Gene |
>VM99_RS27405
ATGAACCCGCGTCTGGCCGCCGCCAAGGCGCTCGCCGCCGTGCTCAGCGGGAAAGCCTCGCTCAACAGTGCCTTGCCGACCCAGTTGGACAAGGTCGAAG AACGTGATCGCGGCTTCACCCAGGACCTGGCCTTCGGCACCGCCCGCTGGCAACCACGGCTGTCGGCCCTGGCGGCCAAGCTGTTGCAGAAACCGTTCAA GGGCGCCGACGCGGACGTCGAGGCGCTGTTGCTGGTGGGGTTGTATCAACTGCTCTACAGCCGCGTGCCCGCCCACGCCGCCATCGGCGAAACCGTGGGT TGCGCCGACAAGCTGAAAAAACCCTGGGCCAAGGCCCTGCTCAACGCCGTGCTGCGCCGCGCCCAGCGCGAAGGCGAAGCCCTGCTGGCCGAGCTGGAAC ACGACCCGGTGGTGCGCACCGCCCACCCGCGCTGGTTGCAAAAGTCCCTGAAGGCGTTCTGGCCCCAGCAGTGGGAAGCCATTTGCGCGGCCAACAATGC CCATCCGCCGATGATCCTGCGGGTCAACCGTCGGCACCACACCCGCGATGCCTACCTGGCCTTGCTGGGCGAGGCCGGCATTGCCGCCGCGCCGTGCGTG TACAGCCGCGACGGTATCGTCCTGGAGACCCCGGGCGATGTCCGCGCGCTGCCGGGCTTTGCCGAGGGCTGGATCAGCGTCCAGGACGAAGCGGCCCAAC TGGCCGCCGACCTGCTGGACCTGGCACCCGGCCAACGGGTACTGGACGCCTGCTGCGCGCCGGGTGGCAAGACGTGCCACATCCTCGAAGCCGAGCCGAA GCTGGCCGGCGTGGTGGCCGTCGACCTGGAAGCCAAGCGCCTGGTGCGGGTCAAGGAAAACCTCGAGCGCCTGGGCCTGGACGCCGAGCTGATCGCCGCC GACGGCCGCGACACCGAGGCCTGGTGGGACGGCAAGCCGTTCCAGCGCATCCTGTTGGACGCACCTTGCTCGGCCACCGGGGTGATCCGCCGCCACCCGG ACATCAAGCTCACCCGCCAACCCGACGACATCGCTGCCCTGGCGTCGTTGCAGGGCGAACTGCTCGACGCGCTGTGGCAGACCCTCGATGTCGGCGGCAT CCTGCTGTACGCCACCTGTTCGACGCTGCCGACCGAGAACACCGACGTGATCGCGGCCTTCCTCACCCGCACCCCCGGTGCCCGGGAGCTGGACATCGCC AGCCAGGCCGGCCTGAAGCAGCCCCATGGCCGCCAGTTGCTGGCCCAAGAGGGCGGTCACGACGGGTTCTACTACGCCAAGCTGATCAAGATCGCCGCCG CGCGCGGTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GACCGATTCGAAAGGAGTGACCGGATGAAAATCATCATCCTTGGCGCCGGGCAGGTCGGCGGTTCGCTGGCGGAACACCTGGCCAGCGAGGCCAATGACA TCACCGTGGTCGATACCGACGGTGAACGCCTGCGAGACCTGGGCGACCGTCTCGACATCCGCACCGTGCAGGGTCGGGGCTCATTGCCGACGGTACTGCG CCAGGCCGGGGCCGACGATGCCGACATGCTCGTGGCCGTCACCAACAGCGATGAAACCAACATGGTCGCCTGCCAGGTCGCCCACACCCTGTTCCACACC CCGACCAAGATCGCCCGGGTGCGCGAAGCGGCCTACCTGACCCGTTCCGACCTGTTCGACAACGAAGCCATCCCGGTGGATGTGCTGATCAGCCCCGAGC AGGTGGTGACCAACTACATCAAGCGCCTGATCGAGCATCCGGGGGCCTTGCAGGTGATCGACTTTGCCGAAGGCCAGGCACAACTGGTGGCGGTGAAGGC
|
|
| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAAKALAAVLSGKASLNSALPTQLDKVEERDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKGADADVEALLLVGLYQLLYSRVPAHAAIGETVG CADKLKKPWAKALLNAVLRRAQREGEALLAELEHDPVVRTAHPRWLQKSLKAFWPQQWEAICAANNAHPPMILRVNRRHHTRDAYLALLGEAGIAAAPCV YSRDGIVLETPGDVRALPGFAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAKRLVRVKENLERLGLDAELIAA DGRDTEAWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALASLQGELLDALWQTLDVGGILLYATCSTLPTENTDVIAAFLTRTPGARELDIA SQAGLKQPHGRQLLAQEGGHDGFYYAKLIKIAAARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|