Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS24770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CACACGTCGCACAGGCGGCCGGCGAAGGGCACGCGCCATTGCTGGTCGCGGCAGGCATGGCCATGGCCTTGCAATACCCGTTCATAAATCGTCTCGGTCG CGGCCTTGAGCTCGGGCCAGGCGAGGTGGGTCGGCTGGCCGAACGTGCGCGGGTGCTTGTCGCCGATGAGTCGGGCAAAGGCGTCGTTGTACAACTGGCA CAGCTGCGGGCCCCACAGCAGGGCCATCGGCATCGGCGAATGGAGCATGATGTCCATGGCGGTGCGCAGGCTCTGGGGCCAGGTGTGGGCAGCGCCCAGC GGGCTCGAGGCCCAGTCCAGGCGGGCGATCAGGCCCTGGGTGTCGCTGCCGACAGGTGTTGCGTTCATCACGGAATCCCTGGAAATCATGTCTGTGTGGC GGTGTCTACTATCCTTCGAGGATGGTAAGCGCGGGTTGGTCTGAAGAGGTGCATGCTCGGGTCAGCTTGTTTCATTGATGTCTCGCGGAAGTTTCAGTCC
|
|
| DNA Sequence for Gene |
>VM99_RS24770
ATGGAAATCGATCCCTTGTTGCGAATCCTGGCGAGCCAGGATGGCTCCGACCTTTATCTGTCCACCGGTGCACCGCCGTGCGCGAAATTCGAGGGGGTGC TCAAGCCCCTGGGTTCCCAGGCGTTCAAGGTTGGCGACATTGCCGGGCTCGCCGAGTCTTTGATGGACGCCGAACAGCGCCTTGAGTTCGATCGAGAGCT GGAAATGAACCTGGCAATTTCCCTCGCCGGCGTCGGGCGGTTCCGGGTCAACGTCTTCAAGCAGCGTAACGACGTGTCCATGGTGATCCGCAACGTCAAG CTGGACATCCCGCGCTTCGAAGACCTGAAGCTGCCTCCGGTGCTGCTGGAGAGCGTGATGCGCAAACAGGGGCTGATCCTGTTCGTCGGCGCCACGGGGT CCGGCAAGTCGACGTCCCTGGCGGCGTTGATCGATTACCGCAATCGCCACAGCAGTGGCCACATCATCACCATCGAGGACCCGGTGGAGTATATCCATCG GCACAAAAAATCGATCATCAACCAGCGTGAGGTCGGTGTCGACACCCGCAGCTTTCACGCCGCCCTGAAAAATACCCTGCGCCAGGCGCCGGACGTGGTG CTGATCGGTGAAATCCGCGACCGGGAAACCATGGAACACGCCCTGGCCTTCGCCGACACCGGGCACCTGGTGATTTCCACGTTGCATGCCCATAACGCCA ACCAGGCCCTGGACCGGGTGATCAATTTCTTTCCCGAAGAGCGCCGGCCGCAACTGCTCAGCGACCTGGCCAACAACCTCCAGGCCTTCATCTCCCAGCG CCTGGTGCGCACCGTGAGCGGCCAGCGCCGCGCGGCGGTGGAGGTGATGCTGGGCTCGCCCACGGTGGCCGACCTGATCCGGCGCAACGAACTGAGCGAG CTCAAGGGCATCATGGAGAAATCGGAAGAGCTGGGCATGCAAACCTTCGATCAGGCCCTGTTCAACCTGGTGGTGGAAGGCGCTATCGACGAGGAGCAGG CGCTGAAGAATGCCGACTCGGCGAACAACCTGCGCTTGCGCCTGAAGCTGCATGCCGAGTCGAGCGCCGCGCCGCCGGCTGATCCGGCGGCGGGGGAGTG GGGGTTGTTGGATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CACAACCCAAGGCGTGTTCCTGTGGCGAGGGAGCTTGCTCCCGCTGGACTGCGCAGCAGGCCTGATGCGGTTGCTGCGCACCCGAGCGGGAGCAAGCTCC CTCGCCACAAAAGCGCTTGGCCGTGCCTAACTGGCCAGTTCCGGCCGCTCCCGAAACTGCTCCAGCGCCTCGGGATTGGCCAGGGCGTCGGTGTTCTTCA CCGCCTCGCCATGCACCACGTTGCGCACCGCCAGCTCCACCACCTTGCCGCTGATGGTTCGTGGAATGTCGGTGACCGGCAGGATCTTCGCCGGAACGTG GCGCGGCGTGGTGTTGGCGCGGATGACCTGGCGGATTCGCTGGGCCAGGTCTTCGTCGAACGCCACCCCGTCGCGCAACCGCACGAACAGCACCACCCGC ACGTCGCCCTGCCATTGCTGGCCGATGGCAACGCTGTCGAGTACCTGCTCGATCTTTTCTACCTGCCGATAGATTTCCGCCGTGCCGATGCGCACGCCGC
|
|
| Amino Acid Sequence |
>twitching motility protein PilT
MEIDPLLRILASQDGSDLYLSTGAPPCAKFEGVLKPLGSQAFKVGDIAGLAESLMDAEQRLEFDRELEMNLAISLAGVGRFRVNVFKQRNDVSMVIRNVK LDIPRFEDLKLPPVLLESVMRKQGLILFVGATGSGKSTSLAALIDYRNRHSSGHIITIEDPVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVV LIGEIRDRETMEHALAFADTGHLVISTLHAHNANQALDRVINFFPEERRPQLLSDLANNLQAFISQRLVRTVSGQRRAAVEVMLGSPTVADLIRRNELSE LKGIMEKSEELGMQTFDQALFNLVVEGAIDEEQALKNADSANNLRLRLKLHAESSAAPPADPAAGEWGLLD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|