Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS23460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCTGACCGAGGAACAGGCCCGAGAGGCAGGCCACCCGGTGCAGATTTTCGAAAGCCGTTTCCGGCCGATGAAGCTGACCCTGACCGACTGCCAGGAAC GCACCCTGATGAAACTGGTGGTCGATGCCCACACTGACAAGGTGCTGGGTTGCCACATGGTCGGCCCGGATGCCGGTGAGATCGTCCAAGGCCTGGCCAT CGCGCTCAAGGCCGGCGCCACCAAGCGTGATTTTGACGAGACCATTGGCGTGCACCCCACGGCCGCCGAAGAGTTCGTCACCCTGCGTACGCCCACCGCC TGATGCGCCAACAAGGCTGCGATCCTTCGTGCAAGCACGTCGGATCGCAGCCTTCGTCTTCGCCCACAGATTTCTTCTATCTATAGCGTTTCCTGATAGC CAAAACCAATCATTCGCATGAGCTTTGCCAATGAGCCAGGCCGGGAATGAGTGGGTAAGATTCTCTCCATCAACTTTTCAACCCTGACGGAGAAACATCG
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| DNA Sequence for Gene |
>VM99_RS23460
ATGCCTATCATCAACAGCCAAGTTAAACCGTTCAAAGCTACCGCCTTCAAAAACGGCGCATTCGTTGAAGTCTCGGACGCTGACCTGAAAGGCAAGTGGT CTGTCGTATTTTTCTACCCAGCCGACTTCACCTTCGTTTGCCCAACCGAACTGGAAGACCTGGCCGACAACTACGCCGAGTTCCAGAAACTGGGCGTCGA GATCTACAGCGTGTCCACCGACACTCACTTTGCCCACGCAGCCTGGCACAACACCTCGCCAGCCATCGGCAAGATCCAGTACACCATGATCGGCGACCCG ACCCTGGCCATCTCCCGCAACTTCGACGTGCTGATCGAAGAAGCTGGCCTGGCTGACCGCGGTACCTTCGTGATCAACCCTGAAGGCCAGATCAAGATCG TTGAAATCAACGACGGCGGCGTAGGCCGTGACGCTTCCGAGCTGCTGCGCAAGATCAAGGCTGCCCAGTACGTTGCCGCTCACCCAGGCGAAGTCTGCCC AGCCAAGTGGAAAGAAGGCGAGGCCACCCTGGCTCCGTCCCTGGACCTGGTCGGCAAGATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCCATGCATCATCCGAGGGCGAATCAGCTCTTGATCTAAGTAAGCCGCTTCGCCCCCAAAAACGCCCGGGCGAGATTCGCTCGGGCGTTGTTTTTTCTG AATTCAAAACATGGAAATCGCCCGTATGTTGGACGCCAATCTTAAAGCTCAGTTGAAGTCATACCTGGAACGGGTCACCCAGCCGATCGAGATCGTCGCA TCCCTCGACGACGGTGCGAAATCCCAGGAAATGCTCGCCTTACTCAAAGACGTTACCAGTCTTTCCGACAAGATTACCTTGCTCGACAACGGCACCGATG CGCGCAAGCCATCGTTCTCGTTGAATCGCCCGGGAGCCGAGATCAGCCTGCGCTTTGCCGGCATCCCCATGGGCCATGAATTCACTTCACTGGTACTGGC CTTGCTGCAAGTCGGCGGCCACCCGTCGAAGGCCAGTGCTGAAGTCATCGAACAGATTCGCGCACTCAAGGGCGAATTCAACTTCGAGACGTATTTCTCG
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| Amino Acid Sequence |
>alkyl hydroperoxide reductase subunit C
MPIINSQVKPFKATAFKNGAFVEVSDADLKGKWSVVFFYPADFTFVCPTELEDLADNYAEFQKLGVEIYSVSTDTHFAHAAWHNTSPAIGKIQYTMIGDP TLAISRNFDVLIEEAGLADRGTFVINPEGQIKIVEINDGGVGRDASELLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLDLVGKI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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