Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS23020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTCTGCACCAACCGACACCTGGCCCAGAGCCTGCCCGCCGGCACCCCGCTGGGCTTCGAGCGCCCGGGGCCGGTGGCCTGGGCCCGCCTGCGCAACCCAC CGAGCCCGCAAAGCCTGCCGCGACTGGACGGCGAGTCGCGCTGGCGACTGGTGTCGCAATTGACCCTCAACCATTTGTCCCTGGTGGAAGGCCCCCAGGC GCTCGATGCCCTGCGCGAGATCCTGGAACTGCATAACCTGCGCGACGAGGCCAGCGCCCGGCGCCAGATCGACGGCGTGTTGGGGCTGGGCTGCGAACGG GTCATCGCCCATGTTGGCGAGGACGCCTGGCGCGGTTGGCGCAACGGCCTGGAAGTGCGCCTGCAACTGGACCCGCAGCATTTCGTCGGCAGCAGCGCCG TGCTGTTCTCCGGGGTGCTGGCGCAGTTCTTTTCCCTCTACGCCACCGCCAACCGCTTCGTGCGCACGGTGCTGGTCCAGTCCGACAAGGAGGTGAAGAC
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| DNA Sequence for Gene |
>VM99_RS23020
ATGGCAACCCCAAGCCGGCAAGCCCCTGACGCTCTGAACCTGAGCCAACGCCTGCGACGCGACCCGCAACGCTTCGAATGGCTCCAGGCGCTATTGGTGC TGGAACGCGAGCATCCCCAGGCCGAAACCCTCGGCAGCGGCACTGCCCCGCACGCCGAGGCGCTGCGCCTGCGCGGGCCGCTGACGCCCGTGTTCGCCGC CAGCGAAGTCGAGCGCCTGGAGCAGGACACCGGCTCACCACCGACCCTGACCACACCGATCTTCGGCCTCGGCGGCCCGGACGGTCCGCTGCCCTACGCC TACCAGGAATGGCTGCAACAACGGGCACGGGCGCGGGACCACGCCCCAGCGGAATTTCTCGACCTGTTCCAGCATCGTCTGCTCAGCCTGCTGTACAAGG TGATGCGCAAGCACCGCATTGCCTTGGGCTTCACCGCCCCCGGGGCTTCGGCCGTACAGGCGCAGTTGCGGGCGCTGACCGGCCTGCTGCCCAAGGCCCT GCAAGAGCGCCAGGCCGCTCCCGATTGCGCCGTGCTCGCCTGCACCGCGCTGTACGCCGACGGCCGTCGTTCCCTGGCCGGCTTCGCGGCCATTGTCCGT GAGCAATTCGGCCTGCCCGTGGAACTGACCGGCTATGCCGGGGGCTGGCGGGAAATCCCGCCGGCCAGCCGCAGCCGCTTGCAGGCCGGGGGACGCAACC TGTGCCTGGGCCGCACGGCCGTGGCCGGGACCCGGGTCTGGGACGAGCATGCCGGCGTGCGCCTGACCCTGGGCCCACTGAGCACCGTCCAGGCCAACGG CCTGCTGCCTGACGGCGACGTCCATCCGCTGCTCGCCAGTCTCTATGCCTTGTATTTCGGCCCGGACCTGGACTGCACGCTGGTGCTGCTGGTCCGTGGC GCCGGGCCGTTGCAACTCGGCCACTCGACGGCGCCGCGCTTGAGCTGGAACGGCGGCCTGCAACGCCAGCCGAGCCTGGCCGTGCAACGCATCGAAACCC GCCTTCGTCAGCCGGAGATCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCTTGGAACGGGCCGCGCAACGCTGCCTGCAACGCGGCCATCATTACGTC GAGATCGAACACCTGTTGCTGGAACTGCTGGACATCGAAGGGGGTGACTTCGCCTGCCTGCTGCCGCGCTTCGGCCTGGAACGCGACGCCGTGGCGACTG AAACCAATCGGGCCCTGGAGCTGTTCAAGTCCGGCAGCACTCGCACCCCCGCCCTGTCGGCGCAGACCATCGGCCTGCTGGAGGATGCCGTGGTGCAGGC CAGCGTGCTAGGCCTGGACAGCATCCGTTCCGGGCTGTTGTTGCTGGCCCTGCTCGATCGCGACGAGCGCCGCGGCTTGCTGCTCAACAGTGCTTCATCG CTGCTGCGCATCCCCCGGGACGCCCTGCGCACCCACCTGCTGGAGTGGACCGAAAGCTCCCGCGAACATACCGGCGGCGTACGCACTGCCAAGCCTGGCG
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| Amino Acid Sequence |
>type VI secretion protein
MATPSRQAPDALNLSQRLRRDPQRFEWLQALLVLEREHPQAETLGSGTAPHAEALRLRGPLTPVFAASEVERLEQDTGSPPTLTTPIFGLGGPDGPLPYA YQEWLQQRARARDHAPAEFLDLFQHRLLSLLYKVMRKHRIALGFTAPGASAVQAQLRALTGLLPKALQERQAAPDCAVLACTALYADGRRSLAGFAAIVR EQFGLPVELTGYAGGWREIPPASRSRLQAGGRNLCLGRTAVAGTRVWDEHAGVRLTLGPLSTVQANGLLPDGDVHPLLASLYALYFGPDLDCTLVLLVRG AGPLQLGHSTAPRLSWNGGLQRQPSLAVQRIETRLRQPEIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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