Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS16595
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGACCGCGTTCCAGATCGGCTTCATGATCTTCATCCCGTTCCTGATCATCGACCTGGTGGTCGCCAGCGTGCTGATGGCCATGGGTATGATGATGCTGTC GCCGCTGATCATTTCCTTGCCGTTCAAGATCATGCTGTTCGTGCTGGTGGATGGCTGGGCGTTGATCATTGGCACCCTGGCGGGCAGTTTCGGCGGTGTT TAGACCTTCCCTGCGGATAGCAAGATATGACGCCTGAAGTTGCGGTAGACCTGTTTCGCGAAGCGCTCTGGCTGACCACCATGATGGTCGCCATCCTGGT GATCCCCAGCCTGCTGGTGGGCTTGCTGGTGGCGATGTTCCAGGCCGCGACCCAGATCAACGAACAGACCCTGAGCTTCCTGCCGCGTCTGCTGGTGATG CTGGTCACGCTGATCGTGGGCGGCCCCTGGATCGTGCAAACCTTTATGGAATACATCCTGCGTTTGTACGGCAGTATTCCGCAGTTGATCGGCTGACCTG
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| DNA Sequence for Gene |
>VM99_RS16595
ATGTCGATGCTTGCGCTGACCGACACCCAGATCAGTTCCTGGGTGGCGGCGTTCGTCCTGCCGCTGTTTCGCGTCACCGCCGTGCTGATGAGCATGCCGG TCTTCGGCACGACCCTGTTGCCGCGACGCGTGCGCTTGTATTTCGCCCTGGCGATCACGGTGGTCATCGCCCCCGGCCTGCCGCCGATGCCGCCGGTCCA TGCATTGGACCTCAGTGCGTTGATGCTGGTGGCCGAGCAGATCCTCATCGGTGCCCTGATGGGGTTCTCGTTGCAGCTGTTTTTCCAGGCATTCGTCGTG GCCGGGCAAATCATTTCGATCCAGATGGGCATGGCCTTCGCCTCCATGGTCGACCCCACCAACGGGGTCAACAGTGCGGTGATCGGGCAGTTCCTGACCA TGCTGGTGACCTTGCTGTTCCTCGCCATGAACGGGCACCTGGTGGTGTTCGAGGTACTGACCGAAAGTTTCACCACGATGCCTGTGGGCAGCGCGCTGCT GGTCAATCATTTCTGGGAGATTGCCGGCAAGCTCGGTTGGGTCCTGGGTGCGGCGATGGTGCTGGTATTGCCGGCGATCACCGCACTGCTGGTAGTGAAC ATCGCTTTCGGCGTCATGACCCGGGCGGCGCCGCAACTGAACATCTTCTCGATCGGTTTCCCGCTGACCCTGGTGCTGGGCATGGTGATCTTCTGGATCA GCCTGGGGGATATTCTCAACCAGTATCAGCCGCTGGCGACCCAGGCCCTGCAGCTGCTACGTGACATGGCACAGGCGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCATGGCTGAAAGCGAGAGTGGCCAGGACAAGACAGAAGACCCCACGGAGAAGCGCAAGCGCGAATCCCGGGAAAAGGGCGAGATTGCCCGCTCCAAGGA GCTCAACACCCTGGCGATCATGCTGGCCGGGGCGGGTGGCCTGTTGATCTACGGGGGTGGGTTGGCCCTGGACCTGCTGGAAATCATGCGCCTTAACTTT TCCCTGCCTCGCGAAATACTGCTCACGCCCGGCGCAATGACGCAGTACCTGTTGCACTCGGGCAAGATCGCGATCCTGGCGGTGCAGCCGATTCTGATTT TCCTGCTGCTGGCGGCCTTTATCGGGCCGATTTCCCTGGGCGGCTGGCTGTTCGCCGCCGGCAGCCTGGCGCCCAAGTTCAGCCGAATGAACCCGCTGTC GGGCCTCAAGCGGATGTTTTCCACTTCGGCGCTGATGGAACTGCTGAAGGCCTTCGGCAAGTTCCTGTTGGTCCTGTCCGTGGCGTTGACGGTGTTGCAG
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| Amino Acid Sequence |
>flagellar biosynthesis protein FliR
MSMLALTDTQISSWVAAFVLPLFRVTAVLMSMPVFGTTLLPRRVRLYFALAITVVIAPGLPPMPPVHALDLSALMLVAEQILIGALMGFSLQLFFQAFVV AGQIISIQMGMAFASMVDPTNGVNSAVIGQFLTMLVTLLFLAMNGHLVVFEVLTESFTTMPVGSALLVNHFWEIAGKLGWVLGAAMVLVLPAITALLVVN IAFGVMTRAAPQLNIFSIGFPLTLVLGMVIFWISLGDILNQYQPLATQALQLLRDMAQAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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