Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS16350
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTCAGCGGCAACGGCTGGCGATCGCCCGCATGGTATTGGCGGATCCGCGGGTGGTGATCCTCGATGAAGCCACGTCCGCGCTGGACGCTGCCACCGAG TACAACCTCCACCAGGCCCTGGCGCGTTTCCTGCGCGGGCGCACCACGCTGATCATCGCCCATCGGCTCTCCGCGGTGAAACAGGCCGACCGCGTGCTGG TGTTCGATGGTGGGCAGATCGCCGAGGACGGCGACCATTTGCAGCTGATTGCCGAAGGTGGCTTGTACGCTCGACTCTACGGTCACTTGCAACAGATACA GCAGCCTTGAGTTTCCGGCACTTTTCTGTGCTTAGTATCGAAAAAAAATCAGCCAAACACCCCCGACTTCACTGAATTTCCAGCTAAAGCCCCTCGATTC TTCCTACCGGCGTTCCAAGGATCGAAAACTAGCCTAGGCTCTGGAATTAGCAGCGGATTTCTCGCGGGTGCTTATCGGCAACGCCTGTGCAAGGGACCTC
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| DNA Sequence for Gene |
>VM99_RS16350
ATGAAGCAAAAACGGACTCTCGGAACGCCTCGATTGTTGGGCATCGTCTGGCCCTTTATTGCCGTTGTGCTATTTCAGGCATTGCTCGGTGGCGTGAGTC TCTACGTATTGTCGGCGGTTCGCGGTTACGTGGCGGGGGAGAGCCTCTGGTCCAAGGGGCAGAAAGACGCCATCTATTACCTCAACCTCTATGCCGACAG CCGCGACGAAGCCATTTTCCTCAAGTACCAGCAAGCCATCGCCGTTCCCGAGGGCGGGCATGAGCTGCGGGTGGCGCTGGACCGCCAGCCGCCGGACCTG GAAGCGGCCAGGACCGCCATCCTCAAGGGCGGCAATCACCCGGACGACGTGGCGAGCCTGATCTGGCTGTATCTGAATTTTCGTCACTTCAGCTACCTGG AAGAGGCCATCGACCTGTGGACGGTGGGGGACGGCTACCTGATCGAGCTGGATAACGTCGCCCAGCAGATGCACGCCAGCATCAGCGCGGGCCAGGCGAC GGAGGTCGATGTCCGCGGCTGGAAGGCGCGGATCTTTGCCATCAACGATTCCGTCACCCCGGCGGCCAAGGCATTCAGCGATGCGCTGGGCGAGGGCTCG CGCTTCATCCTGCGGCTGTTGCTGGTGACCAACTTCGCCACGGCGCTGGGGTTGATCGTCCTGGCATTGCTGCGTACCCACAAATTGCTGGCCCAGCGGC AGGTCTTTGCCAATGCGTTGCAACTGGAGAAGGAACGCGCCCAGATCACCTTGCAATCGATCGGCGACGGCGTGATCACCACCGACGTCGAGGGAGCCAT TGCCTACATGAACCCCGCCGCCGAGGCGATGACCCACTGGAAAGCCGAACATGCCATGGGTCTGCCCCTGGCGGCGCTGTTCAATTTGCTCGATGACAAC GCCCAGGCGGAAGGGCTGACCCTGATCGAGCACATCCTCAGCGGCCGGCTCAGCGGTGCCAGCGAACACTCCAAGCTGATCCAGCGCCTGGACGGCAGCA CCGTGTCGGTCACGCTGGTGGGCGCGCCGATCCGCCATGCGGGCAACGTCAGCGGCGCCGTGCTGGTGCTGCACGACATGACCCAGGAGCGCCAGTACAT CGCCAACCTGTCCTGGCAAGCCACCCATGATGCATTGACCGGGCTGGCCAACCGCCGGGAGTTTGAATACCGGCTCGAACAGGCCCTGCACAACCTCACG CGCCAGGTCGGTCGCCATGCCTTGATGTTCCTCGACCTGGACCAGTTCAAGCTGGTCAACGACACCTGCGGCCACGCCGCGGGCGACGAGTTGTTGCGCC ATATCTGCGCCTTGCTGCAATCGGGGCTGCGGGAAAATGACACCCTGGCCCGGTTGGGCGGGGACGAGTTCGGCATCCTGCTGGAAAACTGTTCGCCGGA GGCCGCGGAAAAGATCGCCGAGGGGCTGCGCCAGACCGTGCAGAACCTGCATTTCGTCTGGAAGGGCCGGCCGTTCGTGACCACGGTGAGCATCGGCCTG GTGCACATCGCCCAGACCCCGACGACCCTGGAGGCCTCCTTGCGGGCCGCCGACATGGCCTGCTACATGGCCAAGGAGAAGGGCCGCAACCGGGTCCAGG TCTACCATGCCGACGACTCGGAGCTGTCCCTGCGCTTTGGCGAGATGGCCTGGGTCCAGCGCCTGCACATGGCCCTGGAGGAAAACCGCTTCTGCCTCTA CGCCCAGGAAATCGCCGCGTTGGGGCCTGGCGACCATGGCGGCGGGCACATCGAAATCCTGTTGCGGCTGCACGACGAGGCCGGGCGGATGATCCTGCCC GACAGCTTCATTCCCGCGGCGGAGCGCTATGGCCTGATGACCTCCCTGGACCGCTGGGTGGTGGAGAACGTGTTCAAGGTCATTCGCCAGTGCCTGAATG AATCACGGCAGGCACCGATGGCCATGTGTGCGATTAATCTGTCAGGTACGACTATCGGAGATCAGGCGTTCCTCGACTTCTTGCGTAAACAATTCGCGGC CTACTCGATCCCCCCGGAAATGATTTGTTTTGAAATTACCGAGACCAGCGCTATTTCGAATTTGGGCAGTGCGATCCGCTTTATCAATGAACTCAAGAGC TTGGGTTGTTACTTCTCGCTGGATGACTTTTGCGCCGGAATGTCTTCATTCGCTTACCTGAAACATTTACCTGTAGACTTCCTGAAGATCGACGGGAGTT TCGTAAAGGATATGCTGGACGACCCGATTAACCGTGCAATGGTCGAAGTGATCAATCATATCGGCCACGTCATGGGTAAGCGCACGATTGCCGAGTTTGT TGAAACCACCCAGATCGAGCAGGCATTGCTGGAAATCGGGGTGGATTACGCTCAAGGGTATGTGATTGAACGCCCGCAATTGTTTACCTGTGACACGTTG CAATGTAGGCCGGCCCGGCCCCAGCCGTTGTTATTCAAGGCCCCCGGCACGTTCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTCTTGTTGATCCGGAAAATCACAATCAAAAGGAGCCAGACAGTGATCGACACATTCAACCGAACAGGCCCGCTCATGGAGGCCCAAAGCTATCCGAA ATGGGCACAACAGCTCATTATCGATTGCAGCGAGAGCAAGCGCCGGGTTGTCGAACACGAGCTGTATCAACGCATGCGCGACAACAAGCTCAGCGCCAAG ACCATGCGCCACTACCTCATTGGTGGTTGGCCGGTCGTTGAACAGTTCGCCTTATACATGGCACAGAACCTCACCAAGACCCGCTTTGCCCGCCATCCCG GCGAGGACATGGCGCGTCGTTGGCTGATGCGTAATATCCGTGTCGAACTCAACCATGCCGACTACTGGGTCAACTGGAGTGCCGCCCATGGCGTCACCCT GGAAGACTTGCAAGCCCAGCAAGTGCCTCCGGAGCTCCATGCGCTGAGTCACTGGTGCTGGCACACCAGTTCGTCGGACTCGCTGATCGTGGCCATCGCC
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| Amino Acid Sequence |
>membrane protein
MKQKRTLGTPRLLGIVWPFIAVVLFQALLGGVSLYVLSAVRGYVAGESLWSKGQKDAIYYLNLYADSRDEAIFLKYQQAIAVPEGGHELRVALDRQPPDL EAARTAILKGGNHPDDVASLIWLYLNFRHFSYLEEAIDLWTVGDGYLIELDNVAQQMHASISAGQATEVDVRGWKARIFAINDSVTPAAKAFSDALGEGS RFILRLLLVTNFATALGLIVLALLRTHKLLAQRQVFANALQLEKERAQITLQSIGDGVITTDVEGAIAYMNPAAEAMTHWKAEHAMGLPLAALFNLLDDN AQAEGLTLIEHILSGRLSGASEHSKLIQRLDGSTVSVTLVGAPIRHAGNVSGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALHNLT RQVGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLRENDTLARLGGDEFGILLENCSPEAAEKIAEGLRQTVQNLHFVWKGRPFVTTVSIGL VHIAQTPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQEIAALGPGDHGGGHIEILLRLHDEAGRMILP DSFIPAAERYGLMTSLDRWVVENVFKVIRQCLNESRQAPMAMCAINLSGTTIGDQAFLDFLRKQFAAYSIPPEMICFEITETSAISNLGSAIRFINELKS LGCYFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETTQIEQALLEIGVDYAQGYVIERPQLFTCDTL QCRPARPQPLLFKAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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