Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS12580 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGTTACCTGGAGCTGGCCCGGGGTGTCCACCCGGACCGGTTTGCCGATGCCTCCGAAGCCGAGCAGCGCCGGGCGCTGGAGCAGTCTGCCAACCTCA ATGAGGCCTACCAGACGCTCAAGCATCCGGCCAAGCGCGCGCGCTACCTGCTCGCCATCAGCGGTCATGAGCTGCCCCTGGAAGTCACGGTCCACGACCC TGAGTTTCTTCTGCAGCAGATGCAGTGGCGCGAAGAGCTCGAAGACCTCCAGGAGAGCGCCGACCTGGCCGGTGTCGCGGCCTTCAAGCGCCGTCTCAAA GACGCCCAGCACACACTGAACGAAAGCTTCGCAGCCTGCTGGAACGATGCCGCGCAACGCGAACAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCG ACAAGCTCACCTACGAAGTGCGCCAGCTCGAAGAGCGCCTCGACGATTAACCCAGTGCCGCTCCGGTCGCACGCCTGATTACAGATAAGTCCTGATTACG
|
|
| DNA Sequence for Gene |
>VM99_RS12580
|hscA
ATGGCCCTACTGCAGATCGCCGAACCCGGCCAAAGTCCACAACCCCACCAGCGTCGCCTGGCAGTGGGAATCGACTTGGGTACTACCAACTCCCTGGTCG CTGCCTTGCGCAGCGGTCTCTCCGAACCGCTGGCGGACGAGCAGGGGCAGGTGATCCTGCCGTCCGCCGTTCGCTACCACGCCGACCGCGTCGAGGTGGG TGAGTCGGCCAAGCTGGCCGCCTCCACTGACCCGCTGAACACCATTGTGTCGGTCAAGCGCCTGATGGGGCGCGGCCTGGCCGACGTCAAGCAACTGGGC GACCAACTGCCGTATCGTTTTGTTGGCGGCGAATCCCACATGCCGTTCATCGACACCGTGCAGGGGCCGAAAAGCCCGGTGCAGGTGTCGGCCGACATCC TCAAGGTCCTGCGCGTGCGTGCCGAAGCCGCATTGGGCGGCGAGCTGGTGGGTGCGGTGATCACCGTTCCGGCCTACTTCGACGACGCCCAGCGTCAAGC CACCAAGGATGCGGCCAAGCTGGCCGGCCTCAACGTGCTGCGCCTGCTCAACGAGCCGACTGCCGCGGCGGTGGCCTACGGGTTGGACCAGCACGCCGAA GGCCTCGTCGCGATCTACGACCTGGGCGGCGGCACGTTCGATATTTCGATCCTGCGCCTGACCGGCGGTGTTTTCGAAGTCCTGGCCACCGGCGGCGACA GCGCCCTGGGCGGTGATGACTTCGACCACGCCATTGCCGGCTGGATCATCGAGCAGGCGGGCCTGTCCGCCGACCTCGATCCGGGTGCGCAGCGCCACCT GCTGCAAACCGCCTGCGCCGCCAAGGAAGCCCTGACCGACGCCGCCAGCGTTCAAGTGCACTACGAAGGCTGGAGCGCTGTGCTGAGCCGTGAAGCCTTC GATGCATTGATCGAACCCATGGTCGCCCGCAGCCTCAAGGCTTGCCGTCGCGCCGTGCGTGACTCGGGCGTCGAGCTCGAAGACGTCAAGGCCGTGGTCA TGGTCGGTGGCTCGACCCGTGTGCCTCGCGTTCGCCAGGCCGTGGCCGAAGCCTTTGGCCGTCAACCGCTGACGGAAATCGACCCGGACCAGGTGGTGGC CATCGGCGCCGCGATCCAGGCCGACACCCTGGCCGGCAACAAGCGTGACGGCGGCGAACTGCTGCTGCTCGATGTGATTCCGCTGTCCCTGGGCCTCGAG ACCATGGGTGGCCTGATGGAGAAGGTGATTCCGCGCAACACCACCATTCCCGTCGCCCGCGCCCAGGACTTCACCACTTACAAGGACGGCCAGTCGGCCA TGATGGTTCACGTGCTGCAAGGCGAGCGTGAGCTGATCAGCGACTGTCGTTCCCTGGCGCGCTTCGAACTGCGTGGCATCCCGCCGATGGTGGCCGGTGC CGCGAAGATCCGCGTGACCTTCCAGGTCGATGCCGACGGCTTGCTCAACGTCACCGCCCGCGAATTGGGTTCGGGTGTCGAGGCAAGCATCCAGGTCAAG CCGTCCTATGGCCTGACCGACGGCGAAATCGCCCGGATGCTCAAGGACTCGTTCCAGTACGCCGGCGACGACAAGGTGGCCCGCGTGCTGCGCGAGCAAC AAGTCGATGCCCAGCGCCTGATCGAAGCGGTGCAGGGTGCCCTCGAGGCCGATGGCGATCGCCTGCTGGACGCCGAAGAGCGCATGGTCATCGAATTGCA GATGCAGGAACTGTCCGAATTGATCAAGGGCACCGATGGCCATGCCATCGAGCAGCAGACTAAGCGTCTGTCGAGCGTCACCGATGCCTTTGCTGCCCGC CGCCTGGACTCGACGGTCAAGGCCGCCCTGGCGGGGCGCAACCTGAATGAAATCGAGGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTGATGCCGCAGATCATTTTTCTGCCACACGCCGAGCACTGCCCGGACGGTATGGTGGTCGAGGCCGAAACCGGCAAATCCCTGCTGGAAGTGGCCCACG ACAACCACATCGAGATCGAAAGCGCCTGCGGCGGCGTTTGTGCCTGCACCACGTGCCATTGCATCATTCGCGAAGGGTTTGACTCGCTGAACGAAGCCGA TGAGCTCGAAGAAGACTACCTGGATCGCGCCTGGGGCCTGGAGCCGACGTCGCGCCTGACCTGCCAGGCCAAGGTCGGCACCGAGGACCTGGTGGTGGAG ATCCCGAAATATTCGCTTAACCATGCGGCCGAAGCGCCGCACTGATGGTGACACTGTCATGAGCTATGGTTGGAATGATGTACGGCGCATCGCTGAGGAA TTGGCCGAAGCGAAGCCAGACGTAGACCCGTTGACGGTCAACTTCGTCGATCTGCAGCGATGGATCATGGAGCTGCCCGACTTCGACAATGCTTCCGGCC
|
|
| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLADEQGQVILPSAVRYHADRVEVGESAKLAASTDPLNTIVSVKRLMGRGLADVKQLG DQLPYRFVGGESHMPFIDTVQGPKSPVQVSADILKVLRVRAEAALGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQHAE GLVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIAGWIIEQAGLSADLDPGAQRHLLQTACAAKEALTDAASVQVHYEGWSAVLSREAF DALIEPMVARSLKACRRAVRDSGVELEDVKAVVMVGGSTRVPRVRQAVAEAFGRQPLTEIDPDQVVAIGAAIQADTLAGNKRDGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQSAMMVHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLNVTARELGSGVEASIQVK PSYGLTDGEIARMLKDSFQYAGDDKVARVLREQQVDAQRLIEAVQGALEADGDRLLDAEERMVIELQMQELSELIKGTDGHAIEQQTKRLSSVTDAFAAR RLDSTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|