Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS08420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTGCGCCAGTTGCGCAACGTGCTGCGCACCCTCGTCGCGCTGTGCGAGGACGGGCGGATTGGCGTGGAGGACTTGCCGGCGATGATCCGTCAGGCGCG GCCGCCAGTCGAGCCGGCACCTGCCACTGAACACCCGCTGGAAGATGCCGAACGGTTGGCGTTGCTCAATGCGCTGGAGCAGACGCGCTGGCACATGACC AACACGGCGGAGCAGTTGGGCATCAGCCGTAACACCCTTTACCGCAAGCTGCGCAAACACGCCATCGCCCGCTGACCCCCGATCCCACGGCCACTGAAAA TCCTTTTGTGGGAGCGGGCTTGCTCGCGAAAGCAGCGTGTCAGCCGATGCATCTATTGAATGACCCACCGCATTCGCGAGCAAGCCCGCTCCCACAGGGT TCAGTGGTGTTCATCGGCCTGAGCATCAGGCAATTCCAAAGACAAGGTGCGATTTCCCCCTCCCTAGGCTAACCTGCGGCCATGTTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>VM99_RS08420
ATGCACATCCATATTCTCGGTATTTGCGGCACTTTCATGGGTTCGATGGCGGTCCTGGCCAAGGAGCTGGGCCATCACGTGACCGGTTCCGACGCCAACG TCTACCCGCCGATGAGCACCCAACTGCAAGCCCAGGGCATTGAATTGACCCAAGGCTACGACCCGGCACAACTGGAGCCGGCGCCGGACCTGGTGGTGAT CGGCAACGCCATGTCCCGGGGCAATCCCGCGGTGGAGTACGTGCTCAATAAAGGCCTGCCGTACGTGTCCGGGCCGCAGTGGCTGGCCGATCACGTGTTG CAGGGCCGCTGGGTACTGGCCGTGGCCGGCACCCATGGCAAGACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAGCACGCGGGCATGAGCCCGGGCT TCCTGATCGGCGGCGTGCCGCAGAATTTCTCGGTGTCGGCGCGCCTGGGCGGTACGCCGTTCTTCGTGATCGAGGCCGACGAGTACGACAGCGCGTTCTT CGATAAACGCTCGAAGTTCGTCCACTACCGTCCACGCACTGCGATCCTCAATAACCTTGAGTTCGATCATGCGGACATCTTCCCCGATCTTCCAGCCATC GAACGGCAGTTCCATCACCTGGTACGGACCATTCCAAGCGAAGGCCTGGTCATTCACCCGACCACCGAGCCGGCCTTGCAGCGGGTGATCGAAATGGGCT GCTGGACCCCGGTGCAAACCACCGGTGCGGGTGGGCAGTGGCAAGTGAAGTTGCTCAAGGACGACGGTTCGCAGTTCGAGGTGATGTTCGAAGGCCAGTC CCAAGGCGTCGTGGAGTGGGACCTGACTGGCCAGCACAACGTTGCCAACGCCCTGGCGACCCTGGCCGCGGCCCGGCATGTCGGCGTGGTGCCGGCCATG GGCGTGGCCGCGCTGAGCGCATTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTCGCCGAGGTGCGTGGCATTACGATCTATGACGACTTCGCCCACCACC CGACCGCCATTGCCACGACCCTCGACGGCTTGCGCAAGCGCATTGGCGACGCGCCTTTGATTGCGATCATCGAACCGCGCTCCAACTCCATGAAACTGGG CGCGCACCGCGATGGCCTGCCGGAAAGCGTGGTCGATGCCGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACTTGGGCGCCACCGCCGCA CTGTGCAGCGTGCCTTCGATTGTCAGCGATTCGTTGGAAGGCATCATCGAACGTGTGAAAAGCCAGGCCCAACCCGGTACCCACGTGGTGATCATGAGCA ATGGTGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAACGGTCCGGAGCGCATCACCCTGGCGATGACCGGTGCTTCCGGTGCCCAGTACGGCTTGCGCCTGCTCGATTGCCTGGTGCGGGAAGACCGCGAGGT GCACTTTCTCATCTCGAAGGCGGCGCAACTGGTGATGGCCACCGAGACCGACGTGACCTTGCCGCCCAAGCCCCAGATGATGCAGGCCTTCCTCACCGAA TACACCGGTGCGGCGGACGGACAGATTCGCGTGTACGGCAAGGAAGACTGGATGTCGCCGGTGGCGTCCGGTTCCGGTGCGCCGGCCGCCATGGTGGTGG TGCCGTGTTCCACCGGGACGTTGTCGGCGATTGCCACCGGGGCGTGCAACAACCTGATCGAACGGGCCGCGGACGTGACCCTCAAGGAGCGCCGCCAACT GATCCTGGTGCCGCGGGAAGCGCCGTATTCGAGCATTCACCTGGAGCACATGCTCAAGTTGTCGAACATGGGCGTGACCATCCTGCCGGCCTCGCCAGGC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLQAQGIELTQGYDPAQLEPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGAGGQWQVKLLKDDGSQFEVMFEGQSQGVVEWDLTGQHNVANALATLAAARHVGVVPAM GVAALSAFKSVKRRMEKVAEVRGITIYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPESVVDADQVIWYAPANLGWDLGATAA LCSVPSIVSDSLEGIIERVKSQAQPGTHVVIMSNGGFGGLHGKLAEALR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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