Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS07840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 734 844 4.03E-23
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1023 1277 3.7E-103
Pfam PF00563 EAL domain IPR001633 EAL domain 1028 1263 8.7E-77
CDD cd01949 GGDEF IPR000160 GGDEF domain 848 1010 1.02036E-61
CDD cd00130 PAS IPR000014 PAS domain 595 711 0.00386502
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 582 721 2.3E-10
SMART SM00091 pas_2 IPR000014 PAS domain 722 788 8.1E-7
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1027 1274 1.31E-93
Pfam PF08447 PAS fold IPR013655 PAS fold-3 477 568 1.4E-7
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 720 1273 0.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 282 447 2.5E-6
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 847 1008 4.2E-50
Gene3D G3DSA:3.30.450.20 PAS domain - - 587 723 3.1E-20
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 852 1013 5.57E-49
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 842 1014 7.2E-45
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 848 1018 3.4E-61
SMART SM00091 pas_2 IPR000014 PAS domain 453 522 1.4
SMART SM00086 pac_2 IPR001610 PAC motif 794 836 3.0E-5
CDD cd01948 EAL IPR001633 EAL domain 1028 1266 5.95349E-117
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1022 1278 1.4E-107
SMART SM00086 pac_2 IPR001610 PAC motif 400 441 400.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 450 581 2.4E-10
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 844 1010 2.1E-40
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 726 842 2.2E-18
SMART SM00267 duf1_3 IPR000160 GGDEF domain 836 1012 1.0E-67
Gene3D G3DSA:3.30.450.20 PAS domain - - 724 847 5.0E-29
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 438 572 6.63E-14
CDD cd00130 PAS IPR000014 PAS domain 731 833 3.40743E-11
CDD cd00130 PAS IPR000014 PAS domain 475 571 2.04593E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 734 835 1.3E-15
SMART SM00052 duf2_2 IPR001633 EAL domain 1022 1268 2.4E-128
SMART SM00086 pac_2 IPR001610 PAC motif 531 574 1.1E-6
SMART SM00091 pas_2 IPR000014 PAS domain 586 652 3.5
Pfam PF13426 PAS domain IPR000014 PAS domain 598 713 8.0E-7
Coils Coil Coil - - 94 114 -
SMART SM00086 pac_2 IPR001610 PAC motif 672 714 9.1E-4
MobiDBLite mobidb-lite consensus disorder prediction - - 1 20 -
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 571 712 3.32E-16
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 283 439 2.54E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 454 586 1.6E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.