Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS07435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCTTGCAGCGTGCTGAGCAGTTGGCTCTGCGGGAACTGGCGCATTTTCAGCGCGTACTCGATGACCGGCCCGTCGCCACCCAGTTGAGGGGCTTCGGCGC TGCCGGTCACAGGCAGCACTTCCAGGTACAGGTCTTGGGTCAGGCGTTGGTTCAGCCGCAGTTCTTCGCCGCAAAAATGCTTGCGCGCCTCGAGGCTGGT GAAGTCGAGGAAACCGAAGTTGACCGGTTTCTTGAATTTGTAGGCGTAGGGCCCGGTGAGCAATACCCAGGAAATATGCGTCTCGATGACCTGAAACCCT TCGACGGGATGCGGGTAGAGGGCCGGGTTTTGCAGGGCAGCGATCAGGGACTGGCTCACGGGCGATCCTTCATAGTCTGGGAAAATTCACGGCCGTCATT ATGGCGGCAAGTGTCGTGAACGCAAACAGGCTGGCCTGGGTGCCAAGCGGGGCCATCGGGCTCATGTTGAACCGTAGCAAAGTGCGTATAATCCGCCGCC
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| DNA Sequence for Gene |
>VM99_RS07435
ATGACTCGTACTCGATCCCCCCGAACCCCCAAGAAACCACCCGCCAGCCGCCTTCGGCCCTGGCTGGGCTGGGCCCTTAAACTCAGCCTGGTCGGCCTCG TCGTGCTCGCCGGTTTCGCGGTCTACCTCGATGCCGTGGTCCAGGAGAAGTTCTCCGGCAAGCGCTGGACCATCCCGGCCAAGGTCTACGCCAGGCCGCT GGAGCTGTTCGTCGGACAGAAGCTGAGCCGCGACGACTTCCTGACTGAACTCGATGCCCTGGGCTATCGTCGCGAAAGCGTCGCCAATGGCCCGGGCGCG GCCTCGGTCAATGGCAATACCGTCGACCTCAACACCCGTGGCTTCCAGTTCTATGAAGGCATGGAGCAACCGCAGCCGGTGCGGGTGCGTTTTTCCGGTG ACTACGTCGCGGCGCTGACCGGCGCCAATAACGCCAGCCTGTCGGTGGTGCGTCTCGAACCGCTGCTGATCGGCGGCCTGTACCCCAAGAACCTGGAAGA CCGGATCCTGATCAAGATCGACCAGGTGCCACCGTTCCTGCTCGATACGCTGATCGCCGTCGAAGACCGTGATTTCTACCATCACTTTGGCGTCTCGCCC AAGTCGATTGCCCGCGCCGTCTGGGTCAACACGTCCTCGGGCCATATGCGTCAGGGTGGCAGTACCTTGACCCAGCAGTTGGTCAAGAACTTCTACCTGA CCAACGAACGCAGCCTCACCCGCAAGCTCACCGAAGCCATGATGGCGCTGCTGTTGGAGCTGCATTACGACAAGCAGGAGATTCTCGAGGCCTACCTCAA CGAGGTCTTCATCGGCCAGGACGGTCAGCGCGCCGTGCACGGTTTTGGTCTCGCCAGCCAGTTCTTCTTCAGCCAGCCGTTGTCCGAGCTCAAGCTGCAC CAGGTGGCGTTGCTGGTGGGCATGGTCAAGGGGCCGTCTTCCTACAACCCGCGGCGTTACCCGGAACGCGCCCTCGAGCGGCGCAACCTGGTGCTCGACC TGTTGCAGCAGCAAGGCGTGGCGACGGCCGAGCAAGTGGAGGCCGCGAAGAAGATGCCGCTGGGCGTGACCAAGCGTGGCAGCCTGGCGGACAGCTCGTT CCCCGGCTTCATGGACCTGGTCAAACGCCAGTTGCGTGAAGACTACCGAGACGAGGACTTGACCGAAGAAGGGCTGCGAATTTTCACCAGCTTCGACCCG ATCCTGCAGATGAAGGCCGAGGCATCGGTGGATGACACCTTCAAGCGCCTCGGCGCGCGCAAGGGCGCCGACGAAGTCGAAGCCGCCATGGTCGTGACCA ACCCGGAAACCGGTGAAGTCCAGGCCATGATCGGCAGTCGCCAGGCCAGTTTCGCCGGTTTCAACCGGGCACTGGATGCGGTCCGCCCGATTGGCTCGCT GATCAAGCCGGCGGTGTACCTCACCGCCCTGGAAAAACCCAGCCAGTACACGCTGACCAGTTGGCTGTCGGACGAGGCGTTTTCGGTCAAGGGCGCCGAT GGCCAGGTCTGGAAGCCGCAGAACTACGACCGGCGTTCCCACGGCACGGTCTTCCTCTATCAGGGGCTGGCGCATTCCTACAACCTGTCAACCGCTCGCC TGGGCCTTGAAGTCGGCGTGCCGAACGTGCTCAAGACCGTCGCGCGCCTGGGAGTGAGCCGCGAATTGCCGGCCTTCCCATCGATGCTGCTGGGGGCGGG CGGCCTTACGCCGATTGAAGTGGCGGCGATGTACCAGACGCTGGCCAACGGCGGCTTCAACACGCCGATGCGCGGGATTCGCAGTGTGCTGACTGCCGAT GGCGAACCGCTCAAGCGGTATCCGTTCCAGATCCAGCAACGGTTCGATCCGGCGTCCATCTACCTGATCCAGAGCGCGATGCAGCGGGTCATGCGCGAAG GCACCGGCAGCTCGGTCTATAACGTGTTGCCCCGGACCCTGACCCTGGCCGGCAAGACCGGTACCAGTAACGATTCGCGTGACAGTTGGTTCGCCGGTTT CAGCCAGGATCTGCTGGCGGTGGTCTGGCTCGGCCGCGACGACAATGGCAAGACCCCGTTTACCGGTGCCACCGGCGCGCTCCAGGTCTGGACCAGTTTC ATGCGCAAGGCCGACCCGTTGCCGCTGGACATGCCGCAACCGGACAATATCGTCCAGGCCTGGGTGGATTCGCGTACGGGCCAAGGCTCCGACGCCAATT GCCCGGGTGCGGTACAGATGCCGTATATTCGCGGCAGCGAGCCTCCACCCGGTGCTGCCTGTGGTAGCCAGAATCCCGCCGAATCGGTGATGGATTGGGT CAAGGACTGGATGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAAGAGGGTTTCAAGTGAACAAGTGGTTGATTCCAGCGGTAACGGCCGTGGCTTTGCTCAGTGGTTGCTCTACCGTACAGCGCGGTTCGATTCCGGTC GTTGATTCCGGCACGGCGGTGTCCAACAGCGAGCGCGTCTCGGCCAATGGCGGTTTCCGGCAGACGACGGTGAAACGTCCGACCCAGGGCCAGGCCCAGG CGATTCCCCAGGGCGACTCCGGTGTCGTCGTGATGATTCCAGGTGGCGGCGCCACGACCTCGGCTCCGATCAGCAGCACGCCGATCACGCCAGGACCGAT CACGCCAGGGCCTATCGAGACGTCGCCGATCAACCAGGGCAGCTACAGCATGCCTTCGACGCCGAGCAGTATCCCGTCGGCCAGCTCGGGTGGCTTGTCC GCCGATGAACAGCTGGACGGTCCGGTGCTGGCGCTGTTGACCACGGCGCAACAGCAACAGGCCGGTGGTGACCTCAACGGTGCGTCGTCGAGCCTTGAGC
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| Amino Acid Sequence |
>penicillin-binding protein
MTRTRSPRTPKKPPASRLRPWLGWALKLSLVGLVVLAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFVGQKLSRDDFLTELDALGYRRESVANGPGA ASVNGNTVDLNTRGFQFYEGMEQPQPVRVRFSGDYVAALTGANNASLSVVRLEPLLIGGLYPKNLEDRILIKIDQVPPFLLDTLIAVEDRDFYHHFGVSP KSIARAVWVNTSSGHMRQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMALLLELHYDKQEILEAYLNEVFIGQDGQRAVHGFGLASQFFFSQPLSELKLH QVALLVGMVKGPSSYNPRRYPERALERRNLVLDLLQQQGVATAEQVEAAKKMPLGVTKRGSLADSSFPGFMDLVKRQLREDYRDEDLTEEGLRIFTSFDP ILQMKAEASVDDTFKRLGARKGADEVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLIKPAVYLTALEKPSQYTLTSWLSDEAFSVKGAD GQVWKPQNYDRRSHGTVFLYQGLAHSYNLSTARLGLEVGVPNVLKTVARLGVSRELPAFPSMLLGAGGLTPIEVAAMYQTLANGGFNTPMRGIRSVLTAD GEPLKRYPFQIQQRFDPASIYLIQSAMQRVMREGTGSSVYNVLPRTLTLAGKTGTSNDSRDSWFAGFSQDLLAVVWLGRDDNGKTPFTGATGALQVWTSF MRKADPLPLDMPQPDNIVQAWVDSRTGQGSDANCPGAVQMPYIRGSEPPPGAACGSQNPAESVMDWVKDWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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