Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS03375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAGATCATGATCCAGGGCTACCTGCCGGCCATCGTCGACGGCGACAAGCGCATCCTGATGATCGACGGCGAACCGGTGGACTATTGCCTGGCCCGGAT TCCAGCGGCTGGCGAAACCCGCGGCAACCTGGCCGCCGGTGGCCGTGGCGAGGCGCGCCCGCTGACCGACAAGGACCGCTGGATCGCCGCCCAGGTCGGC CCGAGCCTGCGGGAGAAAGGCCTGCTGTTCGTGGGCCTGGACGTGATCGGTGAGCACCTGACGGAAATCAACGTCACCAGCCCGACCTGCATCCGCGAGA TCGACAACGCCTTCGGCACCGACATCGGTGGCCTGCTGATGGATGCCATAGAGAAGCAGCTGCAAGCCATTCGCGGCAAGCGGCAAGCGTGAAGCGGACG ATGTGCAGCTTGTCGCTCGCTGCTTGAAGCTTGCAGCTAAAAACCAACATTGCGCTATCATGCCGGGCCCTGAAAAAAAGCGATGTTGGTTTTTGCCGCT
|
|
| DNA Sequence for Gene |
>VM99_RS03375
ATGACCCTCCCGTCCGACCTGCCCCAAGAGCTTGCCCATCGCGGCGTGCGCCCGGCCGATCGCCTCGGTTTTACGCTGTTCCTGGCGGCGCTGATCCACC TGGCCCTGTTGCTGGGCGTCGGGTTTGCCACGGTCGAACCCAAGCAGATCAGCCAGACCCTGGAAATCACCCTGGCCACCTTCAAGAGCGAGACGAAGCC GGCGAAGGCCGATTTCCTCGCCCAGGAAAACCAGCAGGGCAGCGGCACCCTGGAAAAAAAGGCCATTCCCAAGACCACCGAGATCGCGCCGTTCCAGGAC AATCAGGTGCAGAAAACCAGCCCGCCCCCAGCCACCAAGCCCGAGGTGCAGGAGGCCGCGCCGAAGGCCGCCGTGACCACCGTGGCGCCCAAGTCCAAGA AGGCCCCGGTCAAGGAAGAGGTCAAGCCCGACCCCAAGCCCAAGGCCCCCGCCCCAACATTCGACAGCTCCCAGTTGTCCAGCGACATCGCCAGCCTGGA AGCCGAACTGGCCCAGGAGCAGCAGCTCTATGCCAAGCGCCCACGCATCCACCGCCTGAGCGCGGCCTCGACCATGCGCGACAAGGGCGCCTGGTACAAG GACGAATGGCGCAAGAAGGTCGAGCGCATCGGCAACCTGAACTACCCCGACGAAGCGCGGCGCAAGCAGATCTACGGCAACCTGCGGCTGATGGTCTCGA TCAACCGCGACGGCTCGCTGTATGAAGTGTTGGTCCTGGAATCCTCCGGCCAGCCGCTGCTGGACCAGGCGGCCCAGCGGATCGTGCGCCTGGCCGCGCC GTTCGCCCCGTTTACCGGGGATCTGTCGGACATCGACCGGCTGGAGATCATCCGCACCTGGAAATTCTCCCGGGGCGACCGGTTGTCCAGTAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CACATCATTGATGCCTGTGGGAGCGGGCTTGCTCGCGAAGCGGCCTGTACATCCGACAGATTTCTTGCGGCAGGACCACCGTCTTCGCGAGCAAGCCCGC TCCCACATTGATGGGGCCGGGAGGCCGATAGGGGCATTTGCAACGCATCCCCAGCTTGTCAGTTCGCCCCCGCGCCGCCACACTAGCGCCTATGAAAAAC GTCAGCCCCACCTACCTCAAGCATCAATTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTTGCCCATACCTTGACCTACATCGTCGAGCACACGG CCAATGGGGCCATGGGGCTGGTGATCAATCGCCCGCAGGAGCTGAACCTGGCGGACATCCTCGAGCAGCTGCGCCCTGATGTAGAGCCGCCATTGTTGTG CCAGCACGTGCCGATCTTCATCGGCGGCCCGGTGCAAACCGATCGCGGTTTCGTGCTCCATCCGTCGGGGCCGACCTACCAGGCCACGGTGGACCTGAAC
|
|
| Amino Acid Sequence |
>energy transducer TonB
MTLPSDLPQELAHRGVRPADRLGFTLFLAALIHLALLLGVGFATVEPKQISQTLEITLATFKSETKPAKADFLAQENQQGSGTLEKKAIPKTTEIAPFQD NQVQKTSPPPATKPEVQEAAPKAAVTTVAPKSKKAPVKEEVKPDPKPKAPAPTFDSSQLSSDIASLEAELAQEQQLYAKRPRIHRLSAASTMRDKGAWYK DEWRKKVERIGNLNYPDEARRKQIYGNLRLMVSINRDGSLYEVLVLESSGQPLLDQAAQRIVRLAAPFAPFTGDLSDIDRLEIIRTWKFSRGDRLSSN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|