Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS01970
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTACAGCGGCCACCTGGCGGCGCAAACCCGCTACCCCGACGGTTTGAAGGCGATCCTTGGCGAGTATTTCGGCCTGCCGGTGGAAATCGAAGAGTACGTC GGCCAATGGCTGGAGCTGCCGGAACGCAGCCGCGTCGGCGTCAGCGCCCATCAACTGGGCGTGGACTTCTGCCTGGGTCGCTACGTCTGGGATCGCCAGC ACAAGTTCCGCATTCGCCTGGGGCCGCTCAAGCTGGTGGACTACATGGGCATGCTGCCCGGCAGCCAGCCGTTCAATGAACTGGTGGCCTGGGTCGCCGA ATACCTGGGCCATGAACTGGATTGGGACCTGAACCTGGTCTTGGAGCAGCCCGAGGTCCCGGCGCTACAACTCAACGGCCGTTTCCGCCTGGGGTTCAAC ACCTGGCTGGGCCAGCCCGAAAAAGATGCCAACGATCTAATACTGGCCCGGCATTACGCCGAACAGGCCAACACCTCACAGACCTCAAGGAGCCATGAGC
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| DNA Sequence for Gene |
>VM99_RS01970
ATGGGTGAAATCAGTCGCGCCGCGTTGTTCGGCAAACTCAACAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTTCTGCAAGTTGCGCGGTAACC CTTATGTGGAACTGGCCCACTGGTTTCACCAGTTGCTGCAATTGCAGGACTCGGACCTGCACCGCATCATCCGCCAGTTCAACGTCGAGCCGGCGCGCCT GGCCCGCGACCTGACCGACGCCCTGGACCGCCTGCCACGCGGCTCGACCTCGATCACCGACCTGTCGTCCCACGTCGAGGAAGCCGTGGAACGCGGCTGG GTGTATGGCAGCCTGATGTTCGGTGAAAGCCAGGTGCGCACCGGCTACCTGGTGCTCGGCATCCTCAAGACGCCAAGCCTGCGCCACGCGCTGCTGGGGT TGTCGTCGGAGTTCGACAAGGTCAAGGCCGAAGCCCTGAGCGAACGCTTTGACGAATACGTCGGCGACTCCCCGGAAAATGCCCTGACCGCCAGCGACGG CTTCAACGCCGGCAGCGTGCCCGGCGAAGCCAGCGGCGCCATGGCCCCCAGTGCGATGGGCAAGCAGGAAGCGCTCAAGCGCTTTACCGTCGACCTCACC GAGCAGGCCCGCAGCGGCAAGCTCGACCCGATCGTCGGCCGCGATGAAGAGATCCGCCAACTGGTGGACATCCTCATGCGCCGCCGCCAGAACAACCCGA TCCTCACCGGTGAAGCCGGCGTGGGCAAGACCGCCGTGGTCGAAGGCTTTGCCCTGCGCATCGTCGCCGGCGACGTGCCGCCGTCGCTCAAGGACGTGGA ACTGCGCAGCCTCGACGTCGGCCTGTTGCAGGCCGGCGCGAGCATGAAAGGCGAGTTCGAACAGCGCCTGCGCCAGGTCATCGAAGACGTCCAGGCCTCG CCCAAGCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGGTAGGCGCCGGTGGCGCCGCCGGCACCGGTGACGCGGCCAACCTGCTCAAGCCGGCCC TGGCCCGCGGTACCCTGCGCACCGTGGCGGCTACGACCTGGGCCGAGTACAAGAAGCACATCGAGAAAGACCCGGCCCTGACCCGTCGTTTCCAAGTGGT GCAAGTGGCCGAGCCGTCGGAAGACAAGGCCCTGCTGATGATGCGCGGCGTGGCCTCGACCATGGAACAGCACCACCAGGTGCAGATCCTCGACGAAGCC CTGGAAGCCTCGGTCAAGCTGTCCCACCGCTACATCCCCGCTCGCCAGTTGCCGGACAAGTCCGTGAGCCTGCTGGACACCGCCTGCGCCCGCGTCGCCA TCAGCCTGCACGCGGTGCCGGCCGAAGTGGATGACAGCCGTCGGCGCATCGAGGCACTGGAAACCGAGCTGCAGATCATCGCCCGCGAGCACGCGATCGG CGTCGTCATCGGCAACCGCCAGACCCACAGTGAAAGCCTGCTGAGCGCCGAGCGCGAACGCCTGGCCGAACTGGAAAGCCGCTGGGCCGAAGAGAAGAAC CTGGTGGACGAACTGCTCGCCACCCGCGCCACCCTGCGCGAGCGCGTCGGCGTGGTGGACAGCGACGACGCCAGCGAAGCTAGCGACAACGAAAGCCACG ACCTGCGGGCAAAACTGGTGGACCTGCAACAACGCCTCAGCGCCCTGCAAGGCGAGAACCCGCTGATCCTGCCGACCGTGGACTACCAGGCCGTGGCCTC GGTGGTCGCCGACTGGACCGGTATCCCGGTGGGCCGCATGGCCCGCAACGAACTGGAAACCGTGCTCAACCTCGACCAGCACCTGAAAAAACGCATCATC GGCCAGGACCACGCCTTGCAGATGATCGCCAAGCGCATCCAGACTTCCCGCGCCGGCCTGGACAACCCGAGCAAGCCCATTGGCGTGTTCATGCTCGCCG GCACCTCTGGCGTGGGCAAGACCGAAACCGCCCTGGCCCTGGCCGAAGCCATGTACGGCGGCGAACAGAACGTCATCACCATCAACATGAGCGAGTTCCA GGAAGCCCACACCGTGTCCACCCTCAAGGGCGCGCCACCGGGCTACATCGGCTACGGCGAAGGCGGTGTACTGACCGAAGCCGTGCGGCGCAAACCGTAC AGCGTGGTGCTGCTGGACGAGGTGGAAAAAGCCCACCCGGACGTGCACGAGATCTTCTTCCAGGTGTTCGACAAAGGCGTCATGGAGGACGGCGAAGGCC GGGTGATCGACTTCAAGAACACCCTGATCCTGCTGACCACCAACGCCGGCACCGAGCTGATTGCCGACGTCTGCAAAGACCCGCAAAACGTGCCCGAGCC AGAAGAAATCGCCAAGGCCCTGCGCCAGCCGCTGCTGGAGATTTTCCCGCCGGCCCTGCTCGGCCGCCTGGTGACGATCCCGTACTATCCGCTCAGCGAC GAAATGCTCAAGGCCATCACCCGCCTGCAACTCAACCGCATCAAGAAGCGCGTGGAAAGTACCCACAAAGTCGCGTTCGACTACGACGACGCGGTGATCG ACCTGATCGTCTCGCGCTGCACCGAAACCGAAAGCGGCGGCCGTATGATCGACACCATCCTGACCAACAGCCTGCTGCCGGACATGAGCCGCGAGTTCCT GACCCGCATGCTCGAAGGCAAGGCCATGGCCGGCGTGCGGATCAGCGCGGTGGACAACGAATTGCAGTACGATTTCAGCGACGCGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGAAAGGTACACCGGCCCCTGTGGGAGCGAGCTTGCTCGCGATAGCGTAGTTACAGCCAGCATTACGGTTGACTGACACACCGCCATCGCGAGCAAGCT CGCTCCCACAGTTGATCCGGTCTATTCAGGGAAACAGCGGCGCAGCCCATACAACGACGAGATAACCGATGTTATTCAACCAAGCCTCACGCCTGGCCAA AATCACCAGCCCCCTGGGGCCCGAGGTGCTGCTGCTCAAGGACATGGGTGGCGGCGAAGAGCTGGGGCGGCTGTTCAACTATGAGTTGCAGCTGCACTCG CTGGACAACGCCATCGACCTCAACCAGTTGCTCGGCAAGCCCATGTGCGTGAGCCTGCAACTGGACGGCGGCGGCGAACGGTATTTCCACGGCATCGTTG CCCGCTGCAGCCAGAACGTCGACCAGGGCCAGTTCTCCAGCTACCAGGCCACGCTCAGGCCTTGGCTGTGGCTGCTGACGCGCACCTCCGACTGCCGGAT
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| Amino Acid Sequence |
>ATPase AAA
MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLQDSDLHRIIRQFNVEPARLARDLTDALDRLPRGSTSITDLSSHVEEAVERGW VYGSLMFGESQVRTGYLVLGILKTPSLRHALLGLSSEFDKVKAEALSERFDEYVGDSPENALTASDGFNAGSVPGEASGAMAPSAMGKQEALKRFTVDLT EQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRIVAGDVPPSLKDVELRSLDVGLLQAGASMKGEFEQRLRQVIEDVQAS PKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVAEPSEDKALLMMRGVASTMEQHHQVQILDEA LEASVKLSHRYIPARQLPDKSVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREHAIGVVIGNRQTHSESLLSAERERLAELESRWAEEKN LVDELLATRATLRERVGVVDSDDASEASDNESHDLRAKLVDLQQRLSALQGENPLILPTVDYQAVASVVADWTGIPVGRMARNELETVLNLDQHLKKRII GQDHALQMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPY SVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTELIADVCKDPQNVPEPEEIAKALRQPLLEIFPPALLGRLVTIPYYPLSD EMLKAITRLQLNRIKKRVESTHKVAFDYDDAVIDLIVSRCTETESGGRMIDTILTNSLLPDMSREFLTRMLEGKAMAGVRISAVDNELQYDFSDAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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