Pseudomonas chlororaphis PCL1606, PCL1606_RS23025

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00701
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pcz01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz00261 Monobactam biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz00300 Lysine biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF001365 DHDPS IPR002220 DapA-like 1 295 4.0E-81
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 4 294 4.1E-90
SMART SM01130 DHDPS_2 IPR002220 DapA-like 5 295 8.2E-102
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 108 124 1.2E-11
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 40 61 1.2E-11
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 76 94 1.2E-11
SUPERFAMILY SSF51569 Aldolase - - 4 292 1.05E-85
PANTHER PTHR12128 DIHYDRODIPICOLINATE SYNTHASE IPR002220 DapA-like 3 293 9.4E-56
CDD cd00408 DHDPS-like - - 9 291 2.39081E-103
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 133 150 1.2E-11
Pfam PF00701 Dihydrodipicolinate synthetase family IPR002220 DapA-like 7 293 2.3E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.