Pseudomonas chlororaphis PCL1606, PCL1606_RS22730

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50156
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pcz02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 311 323 1.6E-51
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 382 475 3.9E-18
Pfam PF13180 PDZ domain IPR001478 PDZ domain 387 467 2.0E-10
CDD cd00987 PDZ_serine_protease - - 271 360 2.48929E-25
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 225 242 1.6E-51
Pfam PF13365 Trypsin-like peptidase domain - - 99 232 8.1E-35
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 31 264 1.8E-97
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 266 374 4.4E-27
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 241 387 1.1E-9
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 229 354 3.29E-25
Gene3D G3DSA:2.40.10.120 - - - 30 264 5.4E-85
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 269 370 5.6E-33
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 108 120 1.6E-51
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 31 471 0.0
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 129 149 1.6E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 203 220 1.6E-51
SMART SM00228 pdz_new IPR001478 PDZ domain 271 353 1.1E-14
CDD cd00987 PDZ_serine_protease - - 386 471 7.41664E-17
SMART SM00228 pdz_new IPR001478 PDZ domain 385 464 1.8E-11
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 30 262 8.84E-70
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 413 467 7.9E-7
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 388 468 5.2E-97
Pfam PF13180 PDZ domain IPR001478 PDZ domain 273 362 1.4E-16
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 386 473 4.73E-15
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 169 193 1.6E-51

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.