Pseudomonas chlororaphis PCL1606, PCL1606_RS16670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain PCL1606, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCTTCTTATTATATTTAAGCCACCGATGGTTGGATCGCGCTGTGGGGAAGTGTCCCGTGGTAGTTTTTTCCACGCCCACTAAAGCCCACAGGTGGATC CATGACAAACGACTTTCCTGCATCACATCAGTCCCTTGGGGAATACGCAGGCAGTTACAAGCCCTAAATAAACTTGCACTTACAAAGTGCCATTTCCCTT ACAAGTTAAAACCATAAATCCCGCGTATTAGTTGGACTTTTCAGACAGCCAAATAGAAATCCCCTACCTGTTAATAACGGGATCCGGACCAATGATTTAT AGGGGCTAGCCTGCGCAAGCCTCGAAGCAGCCTGCCCGAGAATGGCCCTGAAGTGACAGGTTTTCGGAAAAGCGTACGAAAGGAGCCAAGCCTGACGAAC CCGGACGCAGCCCGATCGATTGAGGGAAATCCCTCATTGCAGGGCCCAGGTCGCGTCTCTAGCATGGTTTCGGCAATCGACCCATTCGCAGGAGAAAACC
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| DNA Sequence for Gene |
>PCL1606_RS16670
ATGGCAACCCCGCAGAGTGACGACAAGCGCCCTACCCCGGACCAGGCAGAGGACAATGCGTTTTTCCCCTCGCCCTATTCGCTGAGCCAGTTCACCTCCC CTAAATCCGATCTCAGTGACGCCGACTATCCCAACGCCTACAAAGGCGGCCGCTGGAAGATCCTGCTGATCGGCGCCGACGAGCGTTATCTGCTGACCGA CAACGGCACGATGTTCTCCACGGGCAATCACCCGGTCGAGACGCTGCTGCCCATGTATCACCTCGACAAGGCCGGCTTCGCTTTCGATGTCGCGACGCTG TCCGGCAATCCGGTGAAGTTCGAGTTCTGGGCCATGCCGTCGCAAGACGCCGAGGTGCAAGGCTTCTACGGCAAATACCGTGAACAGTTCAAACAGCCTC TGAAGCTGGCTGAAGTGATTGAGACGGCGCTGGGCGAAGATTCGGACTACATCGGCGTCTTCATACCCGGTGGCCACGGCGCCCTGATCGGGTTGCCGGA CAGTGCCGAGGTGAAGTCCGTCCTGCAGTGGGCGGTCGCCCATGACAAATTCGTGATTTCCCTGTGCCATGGCCCCGCGGCGCTGCTGGCGGCGGGTATC GATGCATCGAAGAGTTCCTACCTCTTCAACGGCTACAAGATCTGCGCGTTCCCCGACAGCCTCGACGCGAAGACCCCCGATATCGGCTACATGCCGGGGC ATCTGACCTGGAAGTTCGGCGAACGCTTGCAGGCGCTGGGCGTGGAAATCGTCAATCAGGATATTTCCGGGGCGACCCTCCAGGACCGCAAACTGCTGAC GGGCGACAGCCCATTGGCGGGCAACAACCTGGGCAAGCTGGCAGCGCACGCACTGTTGAAAGAGGTCGCGGCCGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAACGGACCTGCCGAGGCCGCCATCCGCGCCGCGCTCGACATAGAGGCGGCGCACAAGCTCGAGTCGATCCAGAAGGCTGTCAGGGAGTTCGCAACCCC CTACGGCTATGATCGATTCGTGCTGTTTTCCGCTTCGTCGGCAAGCGATGAGGTGGTCGAGCGCATCTATTGGGTCGAAGGCCGTTGGTTCGGCGACGGC CACGGCGTCGATGCCGAGACCTACGTGCGGCGTTGCCCGGTCACCCGCCACATCCTCAACGCGCGCGAGGCCTTCTTCTGGCGAAAGGAGCAAAAACAAG GCGAGGAACGTTATCAGGTGATTCGTGCCCCGGGCGGCCCGGGGGTCCAGGGATTGCAGGTGCCGGTGTTCGGGCCGCAGGGGCTCGAAGGCGCCATGAG CCTGGGCGGCGAAGCGGTGGACGGATCGCCACGGGTCCGCCTCGGCTTGAGCCTCATCGCGACCGCGGCTTTTTTCTCCGCGCGCCGGTTGCTCGAAGCG
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| Amino Acid Sequence |
>chaperone protein HchA
MATPQSDDKRPTPDQAEDNAFFPSPYSLSQFTSPKSDLSDADYPNAYKGGRWKILLIGADERYLLTDNGTMFSTGNHPVETLLPMYHLDKAGFAFDVATL SGNPVKFEFWAMPSQDAEVQGFYGKYREQFKQPLKLAEVIETALGEDSDYIGVFIPGGHGALIGLPDSAEVKSVLQWAVAHDKFVISLCHGPAALLAAGI DASKSSYLFNGYKICAFPDSLDAKTPDIGYMPGHLTWKFGERLQALGVEIVNQDISGATLQDRKLLTGDSPLAGNNLGKLAAHALLKEVAAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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