Strain | Pseudomonas chlororaphis strain PCL1606, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
TCGCTGGTGTTGCTGCGTCCGCAGATCGATGCCTTGCTCGACCAGCACCGCGACGTTCTCCAGAGCCTGGACGGCGAGCCCGGCATGCTCATCGCGCCGC GCACGGTGATGCACATCCTGCTGTTGCAGCTGCTGTATTCGGTGCCCGGCGAGCAGCAGCTGTACGAGCAGCTCAATTACAACCTGCTGTTCCGCTGGTT CGTCGGCCTGGACCTGAACCAGAAGGTCTGGAACCTCGGCGTCCTGAGCCGGGACATCGCCACGCTGCTGGGCGATGCGCGGGCGGTACAACTGATCCAG AAAATCATCGGTGAAGTGTTCTGTGGCGCCTTGCTGCACATGCCCGAGTTCTCCCTGAACTTCGCGCTGCTGCACAGCTGGCTGGCCAAGCACGCCACGA CATCGACCTTGAGCAATTGATCCGGCCAAACGCCGTACAGACGGCGACGGCGGCGACGCGGTTCGACATTCTTGGAAATCTAGGGGGCGGTGTGGAGCAT
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DNA Sequence for Gene |
>PCL1606_RS15950
CTGTTCAAGAGAGGGCGGCCGGGGCCGACCAGGCGCTGGCTGCCGGTGTGCGGCTGGCTGGCGCTGGCCGCGGCGAGCCTGCCGGCGTCGGCCGAGGAGG GCGGCCCGGCGGACGGCGAGCCGGTGCCCGGCAGCGCAACGGCTGCGCGGTTGGTGGACGTGAACGAGTATTTCGTGCGCGGCAATACCGTGCTCGATGC CCGGGCGATCGAAGAAGCGGTGTATCCCTACCTCGGCCCGCAAAAAGCCCTGAGCGATATCGAAGGCGCCCGCGACGCCTTGCAGAAGGTCTACCAGGCG CGTGGCTATCAGTCGGTGTTCGTCGAGCTGCCCGAGCAGAAGGTCGAGGACGGCATCGTCTACCTGCAGGTCAGCGAGACCAAGGTCGGCCGGGTGCGGG TGGTCGGCGCCAAGCATTATTCGCCGGTGGAGATCCGCGACGAGGTGCCGGCGCTCAAGGAAGGCGAAGTGCCGGACTTCGCCAAGGTCCAGGGCCAGCT GGCGGGCCTGAACAAGACGCCCGGGCGCCAGGTCATGCCCCTGGTGCGCGAGGGCCAGCGCCCCGGCACCATGGATGTCGACCTGCAGGTCGAAGACCAG AACCCCTGGCAGGCCAGCATCGGCCTGAACAACGACTACAGCGCCGACACCAAGCACCTGCGGGCGGTGACCAGCCTGGGCTACAACAACCTGTGGCAAC TGGGCCACAGCATTTCCCTGACCTACTTCACCGCGCCCGAGGACCAGGACAACGCCAAGGTCTGGTCTGGTTCCTACACCGCGCCGCTGAACGAGCGCTG GAGCCTGCAGTTCGCCGGCTACCAGTCCGATAGCGACGTCGCCACCATCGGCGGCAGCAATGTGCTGGGCAAGGGCCATTCCTACGGCCTGTCGCTGATC TACAGCCTGCCGGCGAGCGGCAGCTGGGCCAACTCGTTCTCGTTCGGGGTGGACTTCAAGGACTTCGAGGAAGAGCTGAGCCTGGGCGGCGAACGCAACA AGGTGCCGCTCAAGTACGCGCCGTTCACCTTCGCCTACAACGGCTTCCGTTATACCGAGACCTCCCAGCTGGGCCTGGGCCTGAGCCTGGTGGCCGGCAC CCGAAGCCTGTTCGGCTACAGCAGTTCGGACGAAGACTTCGACAACAAGCGCTACCGCGCCAACCCCAGCTTCGCCGTGCTCAAGGGCGACGCGAGTTAC ACCTACACCTTCGCCAACGACTGGCAGAGCGCGTCCAAGGCGGCGTTCCAGCTGGCCTCGGGGCCGCTGGTGTCCAACGAGCAATTCTCCGCCGGCGGCG CCACCTCGGTGCGCGGCTACCTGGCGGCCGAGCGCACCAGCGACGACGGCTTGCTGTTTTCCCAGGAGCTGCGCACGCCATCCCTGGCCAGGTTCCTCGG CGGCTATGTCAACGAATGGCGCTTCTACGCCTTCGCCGAAGGCGCGCGCATGTCCCTGCGCGACGAGCTTCCCGACCAGGAGGCCGACTACAGCCTGGCC AGCGTCGGCCTGGGCACCCGCGCCAGCTTGAGCAAATGGCTTTCCGGCAGCCTGGACTGGGGGTACCCGCTGCTTGACGGACCGAACACCCAGAAACAGG ACTCGCGCCTGCACTTCAGCGTACAGGCGACGTTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCTCTCACGGAGTAACTTTCATGCAGCGCTTACTGATTTCCCTGTTGATCTGCCTGGGCTTCGTGCTCCCGGCGACCGCCCAGGCGTGGTGGCAGGATGA CTGGCACTACCGCAAGCAGATCTCGATCGACACCACGCCCCAAGGCGCGGCCATCAACCAGGCCCTGGGCCGCACCGCGCTGCTGGTGCGCCTGCACACC GGCAATTTCAGTTTCGACGGGGTCAAGGAAGACGGCTCCGACCTGCGTTTCGTCAGCGCCGACGACAAGACCGTGTTCAACCACCAGATCGAAAGCTTCG ACCCGCTGATGGGCATGGCCCTGGTCTGGGTCGACGTGCCGAACGTGGAGGGCGGCCAGCGCCAGGATATCTGGATGTACTACGGCAACCAGAAAGCTCC GGCCAGCGCCAACGGCCAGTTGACCTTCGACCCGAACTACATCGGCCTCTATCACTTCGACGGCGCCAACGGCACGCCGGCCAAGGACACCACGGCCTAC
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Amino Acid Sequence |
>membrane protein
MFKRGRPGPTRRWLPVCGWLALAAASLPASAEEGGPADGEPVPGSATAARLVDVNEYFVRGNTVLDARAIEEAVYPYLGPQKALSDIEGARDALQKVYQA RGYQSVFVELPEQKVEDGIVYLQVSETKVGRVRVVGAKHYSPVEIRDEVPALKEGEVPDFAKVQGQLAGLNKTPGRQVMPLVREGQRPGTMDVDLQVEDQ NPWQASIGLNNDYSADTKHLRAVTSLGYNNLWQLGHSISLTYFTAPEDQDNAKVWSGSYTAPLNERWSLQFAGYQSDSDVATIGGSNVLGKGHSYGLSLI YSLPASGSWANSFSFGVDFKDFEEELSLGGERNKVPLKYAPFTFAYNGFRYTETSQLGLGLSLVAGTRSLFGYSSSDEDFDNKRYRANPSFAVLKGDASY TYTFANDWQSASKAAFQLASGPLVSNEQFSAGGATSVRGYLAAERTSDDGLLFSQELRTPSLARFLGGYVNEWRFYAFAEGARMSLRDELPDQEADYSLA SVGLGTRASLSKWLSGSLDWGYPLLDGPNTQKQDSRLHFSVQATF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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