Pseudomonas chlororaphis PCL1606, PCL1606_RS14995

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016742 hydroxymethyl-, formyl- and related transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF036506
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016831 carboxy-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd05257
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02911
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pcz00520 Amino sugar and nucleotide sugar metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd08702 Arna_FMT_C - - 206 295 3.05703E-28
Gene3D G3DSA:3.40.50.12230 - - - 4 301 3.4E-84
PANTHER PTHR43245 BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA - - 320 653 1.6E-83
PIRSF PIRSF036506 MtRNA_frt_NDPSE IPR021168 Bifunctional polymyxin resistance protein, ArnA 3 662 0.0
SUPERFAMILY SSF53328 Formyltransferase IPR036477 Formyl transferase, N-terminal domain superfamily 5 204 4.58E-55
Pfam PF01370 NAD dependent epimerase/dehydratase family IPR001509 NAD-dependent epimerase/dehydratase 321 568 2.2E-43
Pfam PF00551 Formyl transferase IPR002376 Formyl transferase, N-terminal 27 176 9.8E-25
CDD cd05257 Arna_like_SDR_e IPR045869 Bifunctional polymyxin resistance protein ArnA-like, extended (e) SDRs 320 653 4.09955E-121
Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. IPR021168 Bifunctional polymyxin resistance protein, ArnA 3 662 61.566486
FunFam G3DSA:3.40.50.720:FF:000197 Bifunctional polymyxin resistance protein ArnA - - 317 663 0.0
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 320 653 2.79E-69
Gene3D G3DSA:3.40.50.720 - - - 317 660 3.0E-123
Pfam PF02911 Formyl transferase, C-terminal domain IPR005793 Formyl transferase, C-terminal 205 284 1.7E-15
SUPERFAMILY SSF50486 FMT C-terminal domain-like IPR011034 Formyl transferase-like, C-terminal domain superfamily 207 303 8.16E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.