Pseudomonas chlororaphis PCL1606, PCL1606_RS12370

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain PCL1606, complete genome. [Details]
DNA Sequence Upstream of Gene
TACCTGCGCTCGCTCGCGCCGAGCCGGGCCAAGACGGCCGCCGAGGCGCCCAGGGTGATGGTGGCGTTGCTCACCGACCAGGGCCATTCGCGTCCCAGCC GCCTGGACTTCCTGTCCAACACCGCCGATCGCGGGACCGGGACGGTGCGGGTCCGCGCGCTCGTCGACAACCCCGATGGGCAATTGACCCCCGGGCTGTT CGCCCGGATCAGGCTGGAGACCGGCGAGCCGCAAGAGCAGGTGCTGATCTCCGACCAGTCGATCGGCACCGACCAGGGCAGCCGCTACGTGCTGGTGGTC GGCGAGGATGACAAGACCCAGTACCGGCCGGTGGAGCCCGGGCCGATGGTCGATGGCCTGCGCGTGATCAGGCAGGGTCTGCGGCCGGGCGAGCGCATCG TGGTCAAGGGCCTGGTCCGTCCGGACATGCAGATCACGCCGCAGATCGCCGAGATCGACGGGACGCCTGTCGACCTGGGGCAGACCGTGGGGGTGGCGCC
DNA Sequence for Gene
>PCL1606_RS12370
ATGACGTTCCCTCGTTTCTTCATCGATCGCCCGATCTTCGCCATCGTGCTGTCGATCCTGATGATGATTGCCGGCATCGTCGCGTTCTTCCAGTTGCCGC TCAGCGAGTACCCGGCGGTGACGCCGCCGACGGTGCAAGTGACCGCTTCCTATCCGGGGGCCAATCCCAAGGTGATCGCCGAAACGGTGGCGGCGCCGCT CGAACAGGCGATCACCGGGGTGGAGGGCATGCTGTACATGGCTTCGCAGTCGGCCACCGACGGCCGCCTGATCCTCACCGTCACCTTCGCCCAGGGGACG AATGCCGACATGGCACAGGTGCAGGTGCAGAACCGCGTCTCGCGGGTGCTGTCGCGCCTGCCGGAAGAAGTGCAGCGCCAGGGTGTGGTCACCCAGAAGA CCTCGCCGGACATCCTGATGGTGGTGCACCTGCTGTCGCCGGACAAACGTTACGACCCGCTCTATATCTCGAACTACGCCTATCTGCAGGTGCGCGACGA GTTGTCCCGCCTGCCGGGCATCAGCGATGTCCTGGTGTGGGGCGCAGGCGAATACAGCATGCGCCTGTGGCTCGATCCGGACCTGATTGCCGCCCGTGGG CTGACCGCCGGCGAGGTGATTGCCGCGGTGCGCGAACAGAACGTGCAGGTGGCGGCCGGTTCGGTCGGCCAGGCGCCCGATTCCACCGCGGCCTTCCAGG TCACGGTGAACACCCTGGGTCGCCTGAGCGACGAGGAGCAATTCGCCGACATCATCCTGCGCATTGGCGACAACGGTCAGGTGACGCGCCTGCGCGACGT CGCGCGGATCGAGATGGGCGGCGACGCCTATGCCTTGCGCAGCCTGCTCGACGGCGAACCGGCCGTGGCGTTGCAGATCATCCAGAGCCCGGGGGCCAAC GCGCTCGATGTGGCCCAGGCGGTGCGGGACACCATCCAGCGCCTGGAAGCCGATTTCCCGGCCGGGCTCAGCTCGCGGATCGCCTATGACCCGACGGTGT TTGTCCGCGCCTCGTTGCAGACGGTGGCCACCACCTTGCTCGAGGCGATCCTGCTGGTGGTGGTCGTGGTCGTGGTGTTCCTGCGCAGCTGGCGGGCGTC GCTGATCCCGCTGCTGGCCGTGCCGGTGTCGCTGGTCGGCACCTTCGCCGTCATGCACCTGATGGGCTTCTCGCTCAATACCCTGTCGCTGTTCGGGCTG GTGCTGTCGATCGGCATCGTCGTCGACGACGCGATCGTGGTGGTCGAGAACGTCGAGCGCCACATCGAGAATGGCGAGGCGCCCACGGAGGCGGCACGGC GCGCCATGGACGAGGTGACCGGCCCGATCATCGCGATCACCTCGGTGCTCGCGGCGGTGTTCATCCCGACCGCTTTCCTGAGCGGTCTGCAGGGTGAGTT CTATCGCCAGTTCGCGCTGACCATCGCCATCTCGACCATCCTTTCCGCGGTCAACTCGCTGACGCTCAGCCCGGCGCTCGCCGGCATGCTGTTGCGTCCG CGCCACGCCGCGACACCGGCCCCGGCGCACAGCCTGCGGGGCCGTGCGGCGCGGGCGCTGCAGACGCTCGGCCGGCCGTTCCAGCAGGCGCCGCAGGCCT ATGGCAACACGGTGCGCAAGGTGGTGCGGGTCAGCGCGGTGGCGCTGCTGGTCTACGCCGGGCTGCTCGGGCTGACCTTCCTCGGCTTCAAGGCTGTCCC GCCGGGCTTCGTGCCGATGCAGGACAAATATTACCTGGTCGCCATCGCCCAGCTGCCGAACGCGGCCTCCCTGGACCGCACCGAAGCGGTGGTCAAGCAG ATGTCCAGCATCGCCCTGGCCGAGCCCGGGGTCGAAAGCGTGGTGGCCTTTCCCGGGCTGTCGGTCAATGGCTTCGTCAATGTGCCGAACGCCGCGGTGA TCTTCATCATGCTCGACCCGTTCGAGGCGCGCACCAGCGCCGACCTCGGCGCCGTGGCCATCGCCGGGCGCCTGCAAGCCCGGTTCGCCGGGATTCCCGA CGGCTTCCTCGGAGTGTTCCCGCCACCGCCGGTGCCCGGCCTCGGCGCCACGGGCGGGTTCAAGATGCAGGTCGAGGACCGTGGCGGCGCCGGGCTCGAG GCCCTGGCCCGGCAGACCCGGCTGCTGATGCTCAAGGCCAACGAGTCGGGGCAACTGGCCGGGCTGATGACCAGTTTCGACATCAACGCCCCGCAGCTCG ACGTGGTGGTCGACCGGACCCAGGCCAAGAGCCAGGGCGTGCACCTGGCGGATGTGTTCGAGACGCTGCAGGTCTATCTCGGCTCGCTGTACGTCAACGA CTTCAACCGCTTCGGCCGCACCTACAAGGTCACGGCGCAGGCCGACGCGGATTACCGCATGCAGGCCGAAGCCATCGGCCGCTTGCAGGTGCGCAACGCG GCCGGGGCGATGCTGCCGTTGTCCTCGTTCGTCACGGTCACGCCGGGCTCCGGGCCGGACCGGGTGATCCACTACAACGGCTACCCCTCGGCCGATATTT CCGGTGGCGCGATGGCGGGCGTCAGTTCGGGGCAGGCGGTCGCGCTCATGGAGCGCCTGGCAAAGGAGCAGCTGCCGGACGGCATGACCTTCGAGTGGAC CGACCTCACGTACCAGCAGAAACTCGCCGGCGATTCAGCGCTGTTCATCTTCCCGCTGTGCGTGCTGCTCGCCTATCTGATTCTCGCCGCGCAATACAAC AGTTGGCTGCTGCCCCTGGCGGTGCTGCTGATCGTGCCGATGTGCCTGTTGAGCGCGATCATCGGGGTATGGCTGGTGGACGGCGACAACAACGTCTTCG TGCAGATCGGGCTGGTGGTGCTGGTCGGCCTGGCCGCCAAGAACGCCATCCTTATCGTCGAGTTCGCCCGCAGCCTGGAGGCCGGGGGATCGAACACGCT GGAGGCGGTCGTCGAGGCCTGCCGCTTGCGCCTGCGGCCGATCCTGATGACCTCGTTCGCCTTTATCGCCGGGGTCGTGCCGCTGGTCCTGGCCAGCGGC GCCGGGGCCGAGATGCGCCAGGCCATGGGCGTCGCGGTGTTCGCCGGGATGCTCGGGGTGACGCTGTTCGGCCTGTTCCTGACACCGGTCTTCTATGTGT TGGTGCGTAGGCTGGCGGCGCGCTTCGAGCGGCCCGCCCGGCAAAGGCTGACGCGCCTGGAGGAGAGCCACCCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACGCTCGCAACCCGAAAGTCCTGCTGCCGCTCGCTGCGTTCGTCCTGTTGGCCGGATGCGCGGCGGTGGGCCCCGACTACTCGCCGCCGGCGGCGCAACT GCCCGCCAGCTTCGGCACCACAGCCGCCGGCCTGACCCCGGAAACCGTCGAGGTCCAGTGGTGGCGGGCCTTCGACGAACCGGCGCTGACCGGCCTGATC CAGCAGGCGCTGGCGGCCAACCATGACATCGCGCTCGCCGCCGCGCGGCTCGACGAGGCGAGGGCGGTCCTGCGCGAAAGCCGCCAGGAGTTCCTGCCGC GTGGCGGGCCCGCGCTCGGCTATGAGGCGGTGCGGCGCAGCGAGATGGAGACGCCGGCCGGGCAGCAACGCGAGATCGAGACCTATCGCGGCGCTGTCGA TGCGTCCTGGGAAATCGACCTGTTCGGCCGCGTGCGGCGTTCGGTGGAAGCGGCCCAGGCCCAGGTGGGCTCGCGCGAGGCGCTGTTGCGCGGGGTGCAG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MTFPRFFIDRPIFAIVLSILMMIAGIVAFFQLPLSEYPAVTPPTVQVTASYPGANPKVIAETVAAPLEQAITGVEGMLYMASQSATDGRLILTVTFAQGT NADMAQVQVQNRVSRVLSRLPEEVQRQGVVTQKTSPDILMVVHLLSPDKRYDPLYISNYAYLQVRDELSRLPGISDVLVWGAGEYSMRLWLDPDLIAARG LTAGEVIAAVREQNVQVAAGSVGQAPDSTAAFQVTVNTLGRLSDEEQFADIILRIGDNGQVTRLRDVARIEMGGDAYALRSLLDGEPAVALQIIQSPGAN ALDVAQAVRDTIQRLEADFPAGLSSRIAYDPTVFVRASLQTVATTLLEAILLVVVVVVVFLRSWRASLIPLLAVPVSLVGTFAVMHLMGFSLNTLSLFGL VLSIGIVVDDAIVVVENVERHIENGEAPTEAARRAMDEVTGPIIAITSVLAAVFIPTAFLSGLQGEFYRQFALTIAISTILSAVNSLTLSPALAGMLLRP RHAATPAPAHSLRGRAARALQTLGRPFQQAPQAYGNTVRKVVRVSAVALLVYAGLLGLTFLGFKAVPPGFVPMQDKYYLVAIAQLPNAASLDRTEAVVKQ MSSIALAEPGVESVVAFPGLSVNGFVNVPNAAVIFIMLDPFEARTSADLGAVAIAGRLQARFAGIPDGFLGVFPPPPVPGLGATGGFKMQVEDRGGAGLE ALARQTRLLMLKANESGQLAGLMTSFDINAPQLDVVVDRTQAKSQGVHLADVFETLQVYLGSLYVNDFNRFGRTYKVTAQADADYRMQAEAIGRLQVRNA AGAMLPLSSFVTVTPGSGPDRVIHYNGYPSADISGGAMAGVSSGQAVALMERLAKEQLPDGMTFEWTDLTYQQKLAGDSALFIFPLCVLLAYLILAAQYN SWLLPLAVLLIVPMCLLSAIIGVWLVDGDNNVFVQIGLVVLVGLAAKNAILIVEFARSLEAGGSNTLEAVVEACRLRLRPILMTSFAFIAGVVPLVLASG AGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVRRLAARFERPARQRLTRLEESHP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site