Pseudomonas chlororaphis PCL1606, PCL1606_RS04010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00936
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00936
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pcz00550 Peptidoglycan biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A 62 73 1.2E-16
Pfam PF07943 Penicillin-binding protein 5, C-terminal domain IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal 275 365 3.5E-24
PANTHER PTHR21581 D-ALANYL-D-ALANINE CARBOXYPEPTIDASE - - 34 282 1.5E-44
Pfam PF00768 D-alanyl-D-alanine carboxypeptidase IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal 28 255 6.4E-88
Gene3D G3DSA:2.60.410.10 - IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily 275 365 1.6E-27
SMART SM00936 PBP5_C_2 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal 275 365 1.3E-33
PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A 142 155 1.2E-16
SUPERFAMILY SSF56601 beta-lactamase/transpeptidase-like IPR012338 Beta-lactamase/transpeptidase-like 28 360 3.47E-90
PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A 115 132 1.2E-16
Gene3D G3DSA:3.40.710.10 - IPR012338 Beta-lactamase/transpeptidase-like 24 274 2.8E-98

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.