Pseudomonas chlororaphis PCL1606, PCL1606_RS00575
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain PCL1606, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGACATCCTCGCCCTGGCCCGGCACTTCGCCGACAAAGCCTGCGCCTTCTTGCAGCGCGACCCGGTGAGCTGGTCGGACACCGCCCTCAATCACCTGT CGGGCTACACCTTCCCGGGCAACGTGCGCGAGCTCAAGGGCCTGGTCGAGCGCGCGGTATTGCTGTGCGAGGGCGGCGAGCTGCTGGCCGAGCATTTTTC CCTGAGCAGCGAGGCGCTGCCGGAGGAGCCCGGGCTGAACCTGCGCGAGCGCCTGGAAAAGGTCGAGCGTCACCTGTTGCTCGACTGCCTGCGCAAGAAC GACGGCAACCAGACCCTGGCGGCCCGCGAACTGGGGCTGCCCAGGCGCACGCTGCTGTACCGGCTGGGGCGGCTGAATATCAATCTTGGCGACTTCGAGG GGTAGCGCGGCATGACTTCCCCCAGCGCCTGTTTCGTTTCTCTAAGCGTCGTCCGTCAGGGTCGGCGCTTTGTGCATTGTCTATCCATGGAGACCCTCTG
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| DNA Sequence for Gene |
>PCL1606_RS00575
ATGTCTGTTCGTCACTGGCAAGCCGTCCTGCTGGCCCTGGTCGTTCTCAGCGGCCTCGGCGGCTGTAGCGGCAATTACAAATTCAACGACAACACCTATC GCCCATTGGGTGATCCGCAGGCGGTCAATCGCGGCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCAAGGAGCATCATCATGGAACTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCCACGGAGTTGAGCAGCAAAACCTTCAAGCAGGCCGGCGG CGTGATCGGGCGGGGCGAGGATTGCGACTGGATCATTCCTGATCGCAAGCGCCACCTGTCCAATCACCACGCGATCGTCAGCTACCGCGACGGGGTGTTT TTCCTCACCGACACCAGCAGCAACGGCATCCAGGCCAGCGACAGCGGCGCCCGCCTGCGCAAGGGCGAGCCGCAGCGCATCGAGCACGGCAGCGTCTATG TGCTGGGGGATTTCGAGATCCGCGCACGCCTGGTACGCGACCCGGCGACCTTCGACACCGAGGTCGGGCGTCCGCAAGCCGCGGGCAGCATCATTCCCGA TGACGCCTTCCTCGACCTCGATCCGCTCAACGCGCTGGACCAGCAGGAGCGGGTGTATTCGGAAATCGACGAGCTGACCGCGCTCAACACGCCGCGCCAG
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| Amino Acid Sequence |
>type VI secretion protein
MSVRHWQAVLLALVVLSGLGGCSGNYKFNDNTYRPLGDPQAVNRGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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