Pseudomonas chlororaphis PCL1606, PCL1606_RS00560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pcz02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF06996 | Type VI secretion, TssG | IPR010732 | Type VI secretion, TssG-like | 20 | 320 | 8.1E-88 |
| Coils | Coil | Coil | - | - | 209 | 236 | - |
| NCBIfam | TIGR03347 | JCVI: type VI secretion system baseplate subunit TssG | IPR010732 | Type VI secretion, TssG-like | 20 | 320 | 7.6E-97 |
| PANTHER | PTHR35564 | - | IPR010732 | Type VI secretion, TssG-like | 2 | 333 | 4.0E-104 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.