Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS02920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGACTCGGCGCGCATCGGCAGCTCCCGGGCCATCACCCAGCTGATCCTCAACCTGGTGGAAGGCACGCCGATCCGCCTGTTCGACGGTGGAGAGCAGA AACGCTGCTTCACCGACATCGCCGACGGCATCGAGGCCCTGGCGCGCATCGTCGACAACGAAAACGATGTGTGCAACGGCCAGATCATCAACATCGGCAA CCCGGACAACGAAGCCAGCATCCGCCAGTTGGGCGAAGAGCTGCTGCGTCAGTTCGAAGCCCACCCGCTGCGTGGCAACTTCCCGCCGTTCGCCGGTTTC CGCGACGTCGAGAGCAAGTCGTTCTACGGCGCCGGCTACCAGGACGTGGAACACCGCAAACCGCGCATCGCCAACGCCAAGCGCCTGTTGAACTGGGAAC CGACCGTCGAGATGAAGCAAACCATCGGCAACACGCTGGACTTCTTCCTGCGCGAAGCCATGCTCGAAATCGCGGAGCCCTCTAAAGAAGAAGCATGCTG
|
|
| DNA Sequence for Gene |
>PCH03S_RS02920
ATGCAGGCAGGTCTGCGAATCGATGTCGACACCTATCGCGGCACCCGTGAGGGGGTGCCGCGGTTGCTGGAACTGCTCGATGAAGCCGGGATCAAGGCCA CCTTCTTCTTCAGCGTCGGCCCGGACAACATGGGGCGCCACCTGTGGCGCCTGATCCGTCCGCAATTTCTGTGGAAGATGCTGCGCTCCAACGCCGCCGG CCTGTATGGCTGGGACATCTTGCTGGCGGGCACCGCCTGGCCGGGCAAGCCGATCGGCCGCGACCTCGGACACCTGATGCGTCAGGCCCGGGACGCCGGT CATGAAGTCGGCCTGCACGCCTGGGATCACCACGGCTGGCAGGCCAATGCCGGGCGCTGGAACCAGGCGCAGCTGATCGAGCAGATTCGCCAGGGCGTCG ACACCCTCAATGACATTCTCGGCCAGCGCATCGACTGTTCGGCGGCCGCCGGCTGGCGCGCCGACGAGTCGGTGATCGCAGCCAAGCAGGGCTTCGGCTT TCGCTACAACAGCGACTGCCGCGGCACCTCGATCTTCCAGCCACGGCTGGCGGATGGCGGCCTGGGCGCCCCGCAGATTCCGGTCGACCTGCCGACCTTC GACGAAGTGGTCGGGCCGACCGTCGTGGCCCACGACTTCAACACATTCATCCTGGACCGGTTCAGCCCTGAGAGGCTCAACGTCTACACCATTCACGCCG AAGTCGAAGGGATTCTGATGGCCAACGATTTTCGTCAGCTACTGGCGCAAGCCCGCCAGCGCGACATTCATTTCACTCCCCTGGGCAACCTATTGCCCAC GTCCTTGCAGAGCCTGCCCCAGGGGCAAGTCATTCGTGGCGCCCTCGAAGGTCGCGAAGGCTGGCTGGGGGTGCAAGGCGCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCAGACGCTGGGCCCTGCCTCTTCTACTGCTTGCCTTCGGCCTGTTCTACCTGCTGCCAATGGCCACCCACGGTTTGTGGATTCCCGATGAAACCCGCTA TGCGCAGATCAGCCAGGAAATGCTCCTGACCGGCCACTGGGCATCGCCGCATTTCATGGGCATCCGTTATTTCGAGAAGCCAGCCGCCGGCTACTGGATG ATCGCCCTCGGCCAGGAGGTGTTCGGCCAGAACCTGTTCGGCGTGCGCGTGGCTTCGGCCCTGAGCATGGGCCTCAGCGTGCTGCTCACCTACCTGCTGG CCAGGCGGCTGTGGAACGACCCGCGCAAGAGTCTGGTCTGCGCCCTGCTGTACATGAGCTTCTGCGTGGTGGTCGGCGCCGGTGGTTATGCCAACCTCGA CCCGCAGTTCACCTTCTGGGTCAACCTGAGCCTGGTGGCCCTGTGGTTCGCCCTGGACAACCAGACGCTGCGCGGCCGCCTGCTGGCCTGGGCCGGCCTG
|
|
| Amino Acid Sequence |
>4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
MQAGLRIDVDTYRGTREGVPRLLELLDEAGIKATFFFSVGPDNMGRHLWRLIRPQFLWKMLRSNAAGLYGWDILLAGTAWPGKPIGRDLGHLMRQARDAG HEVGLHAWDHHGWQANAGRWNQAQLIEQIRQGVDTLNDILGQRIDCSAAAGWRADESVIAAKQGFGFRYNSDCRGTSIFQPRLADGGLGAPQIPVDLPTF DEVVGPTVVAHDFNTFILDRFSPERLNVYTIHAEVEGILMANDFRQLLAQARQRDIHFTPLGNLLPTSLQSLPQGQVIRGALEGREGWLGVQGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|